CF504716 | Citrus Genome Database

Overview


Name	CF504716
Unique Name	CF504716
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	247

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.979e-30
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3

Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNH  A  ++K
Sbjct:  204 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRK 248

HSP 2 Score: 71.633 bits (174), Expect = 2.979e-30
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1

Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            F+ EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q +IEI
Sbjct:  241 FIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEI 284

BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.979e-30
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3

Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNH  A  ++K
Sbjct:  204 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRK 248

HSP 2 Score: 71.633 bits (174), Expect = 2.979e-30
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1

Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            F+ EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q +IEI
Sbjct:  241 FIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEI 284

BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.979e-30
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3

Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNH  A  ++K
Sbjct:  204 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRK 248

HSP 2 Score: 71.633 bits (174), Expect = 2.979e-30
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1

Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            F+ EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q +IEI
Sbjct:  241 FIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEI 284

BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.979e-30
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3

Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNH  A  ++K
Sbjct:  204 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRK 248

HSP 2 Score: 71.633 bits (174), Expect = 2.979e-30
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1

Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            F+ EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q +IEI
Sbjct:  241 FIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEI 284

BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP7C_HUMAN (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.979e-30
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3

Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNH  A  ++K
Sbjct:  204 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRK 248

HSP 2 Score: 71.633 bits (174), Expect = 2.979e-30
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1

Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            F+ EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q +IEI
Sbjct:  241 FIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEI 284

BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP7C_HORSE (Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.979e-30
Identity = 36/45 (80.00%), Postives = 41/45 (91.11%), Query Frame = 3

Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMVNH  A  ++K
Sbjct:  204 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRK 248

HSP 2 Score: 71.633 bits (174), Expect = 2.979e-30
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1

Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            F+ EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q +IEI
Sbjct:  241 FIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEI 284

BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP70_CLAHE (Heat shock 70 kDa protein OS=Cladosporium herbarum GN=HSP70 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.879e-30
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 3

Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS LTIEEGIFEVK+TAGDTHLGGEDFDNR+VNH     ++K
Sbjct:  202 TFDVSFLTIEEGIFEVKSTAGDTHLGGEDFDNRLVNHFSNEFKRK 246

HSP 2 Score: 74.3294 bits (181), Expect = 3.879e-30
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1

Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            F  EFKRKHKKD+S N RALRRLRT+CERAKRTLSS+AQT+IEI
Sbjct:  239 FSNEFKRKHKKDLSDNARALRRLRTACERAKRTLSSSAQTSIEI 282

BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HS7C1_DICDI (Heat shock cognate 70 kDa protein 1 OS=Dictyostelium discoideum GN=hspB PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.879e-30
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 3

Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVSLLTIE+G+FEVKATAGDTHLGGEDFDNR+V+H     ++K
Sbjct:  202 TFDVSLLTIEDGVFEVKATAGDTHLGGEDFDNRLVSHFVDEFKRK 246

HSP 2 Score: 75.0998 bits (183), Expect = 3.879e-30
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1

Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            FV EFKRKHKKDI GN RA+RRLRT+CERAKRTLSS+AQ +IEI
Sbjct:  239 FVDEFKRKHKKDIMGNQRAVRRLRTACERAKRTLSSSAQASIEI 282

BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP70_ONCTS (Heat shock 70 kDa protein OS=Oncorhynchus tschawytscha GN=hsp70 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.050e-30
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 3

Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTIE+GIFEVKATAGDTHLGGEDFDNR+V+H     ++K
Sbjct:  206 TFDVSILTIEDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRK 250

HSP 2 Score: 74.7146 bits (182), Expect = 5.050e-30
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1

Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            FV+EFKRKHKKDIS N RALRRLRT+CERAKRTLSS++Q +IEI
Sbjct:  243 FVEEFKRKHKKDISQNKRALRRLRTACERAKRTLSSSSQASIEI 286

BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP7A_DROME (Heat shock 70 kDa protein cognate 1 OS=Drosophila melanogaster GN=Hsc70-1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.051e-30
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 3

Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTIE+GIFEVKATAGDTHLGGEDFDNR+VNH     Q+K
Sbjct:  204 TFDVSVLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFQRK 248

HSP 2 Score: 71.633 bits (174), Expect = 5.051e-30
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1

Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            FVQEF+RKHKKD+  N RALRRLRT+CERAKRTLSS+ Q +IEI
Sbjct:  241 FVQEFQRKHKKDLGQNKRALRRLRTACERAKRTLSSSTQASIEI 284

The following BLAST results are available for this feature:

BLAST of CF504716 vs. ExPASy Swiss-Prot

BLAST of CF504716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
HSP7C_SAGOE	2.979e-30	80.00	Heat shock cognate 71 kDa protein OS=Saguinus oedi...	[more]
HSP7C_RAT	2.979e-30	80.00	Heat shock cognate 71 kDa protein OS=Rattus norveg...	[more]
HSP7C_PONAB	2.979e-30	80.00	Heat shock cognate 71 kDa protein OS=Pongo abelii ...	[more]
HSP7C_MOUSE	2.979e-30	80.00	Heat shock cognate 71 kDa protein OS=Mus musculus ...	[more]
HSP7C_HUMAN	2.979e-30	80.00	Heat shock cognate 71 kDa protein OS=Homo sapiens ...	[more]
HSP7C_HORSE	2.979e-30	80.00	Heat shock cognate 71 kDa protein OS=Equus caballu...	[more]
HSP70_CLAHE	3.879e-30	77.78	Heat shock 70 kDa protein OS=Cladosporium herbarum...	[more]
HS7C1_DICDI	3.879e-30	75.56	Heat shock cognate 70 kDa protein 1 OS=Dictyosteli...	[more]
HSP70_ONCTS	5.050e-30	75.56	Heat shock 70 kDa protein OS=Oncorhynchus tschawyt...	[more]
HSP7A_DROME	5.051e-30	80.00	Heat shock 70 kDa protein cognate 1 OS=Drosophila ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_120000-206 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_H02 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF504716 ID=CF504716; Name=CF504716; organism=Citrus sinensis; type=EST; length=247bp
GTACTTTTGATGTGTCTCTTCTTACCATTGAAGAGGGTATCTTTGAAGTT
AAAGCCACAGCTGGTGATACCCATCTTGGTGGTGAGGATTTTGATAACAG
AATGGTTAACCACCTTTGTGCAAGAGTTCAAAAGAAAGCACAAGAAGGAC
ATTAGTGGTAACCCCAGAGCTCTAAGGAGGTTGAGAACTTCCTGTGAAAG
AGCTAAGAGGACTCTCTCATCAACCGCCCAGACCACCATTGAGATTG