CF504716

Overview
NameCF504716
Unique NameCF504716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length247
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HS71L_PIG (Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.070e-29
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+H     ++K
Sbjct:  206 TFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRK 250

HSP 2 Score: 72.0182 bits (175), Expect = 7.070e-29
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            FV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q  +EI
Sbjct:  243 FVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEI 286
[Close]
BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 7.070e-29
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+H     ++K
Sbjct:  206 TFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRK 250

HSP 2 Score: 72.0182 bits (175), Expect = 7.070e-29
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            FV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q  +EI
Sbjct:  243 FVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEI 286
[Close]
BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.070e-29
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+H     ++K
Sbjct:  206 TFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRK 250

HSP 2 Score: 72.0182 bits (175), Expect = 7.070e-29
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            FV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q  +EI
Sbjct:  243 FVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEI 286
[Close]
BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HS71L_HUMAN (Heat shock 70 kDa protein 1-like OS=Homo sapiens GN=HSPA1L PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.070e-29
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+H     ++K
Sbjct:  206 TFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRK 250

HSP 2 Score: 72.0182 bits (175), Expect = 7.070e-29
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            FV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q  +EI
Sbjct:  243 FVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEI 286
[Close]
BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP70_SCHMA (Heat shock 70 kDa protein homolog OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 7.071e-29
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMV+H     QKK
Sbjct:  202 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVDHFVKEFQKK 246

HSP 2 Score: 68.1662 bits (165), Expect = 7.071e-29
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            FV+EF++K+ KDI  N RALRRLRT+CERAKRTLSS+AQT +EI
Sbjct:  239 FVKEFQKKYNKDIRSNKRALRRLRTACERAKRTLSSSAQTNLEI 282
[Close]
BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP70_PYRSA (Heat shock 70 kDa protein OS=Pyrenomonas salina GN=HSP70 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.203e-29
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVSLLTIEEGIFEVKATAGDTHLGGEDFD+R+VN   +  ++K
Sbjct:  211 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNFFVSEFKRK 255

HSP 2 Score: 71.2478 bits (173), Expect = 9.203e-29
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            FV EFKRK+KKD++ N R+LRRLRT+CERAKRTLSS  QTT+EI
Sbjct:  248 FVSEFKRKYKKDVTSNARSLRRLRTACERAKRTLSSGTQTTVEI 291
[Close]
BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HS71L_BOVIN (Heat shock 70 kDa protein 1-like OS=Bos taurus GN=HSPA1L PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.204e-29
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTI++GIFEVKATAGDTHLGGEDFDNR+V+H     ++K
Sbjct:  206 TFDVSVLTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRK 250

HSP 2 Score: 72.0182 bits (175), Expect = 9.204e-29
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            FV+EFKRKHKKDIS N RA+RRLRT+CERAKRTLSS+ Q  +EI
Sbjct:  243 FVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEI 286
[Close]
BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP72_CAPHI (Heat shock-related 70 kDa protein 2 OS=Capra hircus GN=HSPA2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.198e-28
Identity = 35/45 (77.78%), Postives = 41/45 (91.11%), Query Frame = 3 
Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTIE+GIFEVK+TAGDTHLGGEDFDNRMV+HL    ++K
Sbjct:  207 TFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHLAEEFKRK 251

HSP 2 Score: 68.1662 bits (165), Expect = 1.198e-28
Identity = 32/42 (76.19%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:  121 QEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            +EFKRKHKKDI+ N RA+RRLRT+CERAKRTLSS+ Q +IEI
Sbjct:  246 EEFKRKHKKDIAPNKRAVRRLRTACERAKRTLSSSTQASIEI 287
[Close]
BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.560e-28
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 3 
Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+LTI+ G+FEVKATAGDTHLGGEDFDNR+VNH     ++K
Sbjct:  206 TFDVSVLTIDAGVFEVKATAGDTHLGGEDFDNRLVNHFMEEFRRK 250

HSP 2 Score: 70.8626 bits (172), Expect = 1.560e-28
Identity = 32/44 (72.73%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            F++EF+RKH+KD+S N RALRRLRT+CERAKRTLSS+ Q T+EI
Sbjct:  243 FMEEFRRKHRKDLSRNKRALRRLRTACERAKRTLSSSTQATLEI 286
[Close]
BLAST of CF504716 vs. ExPASy Swiss-Prot
Match: HSP76_HUMAN (Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSPA6 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.560e-28
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 3 
Query:    3 TFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHLCARVQKK 137
            TFDVS+L+I+ G+FEVKATAGDTHLGGEDFDNR+VNH     ++K
Sbjct:  206 TFDVSVLSIDAGVFEVKATAGDTHLGGEDFDNRLVNHFMEEFRRK 250

HSP 2 Score: 72.4034 bits (176), Expect = 1.560e-28
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:  115 FVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLSSTAQTTIEI 246
            F++EF+RKH KD+SGN RALRRLRT+CERAKRTLSS+ Q T+EI
Sbjct:  243 FMEEFRRKHGKDLSGNKRALRRLRTACERAKRTLSSSTQATLEI 286
The following BLAST results are available for this feature:
BLAST of CF504716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71L_PIG7.070e-2973.33Heat shock 70 kDa protein 1-like OS=Sus scrofa GN=... [more]
HS71L_MOUSE7.070e-2973.33Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]
HS71L_MACFA7.070e-2973.33Heat shock 70 kDa protein 1-like OS=Macaca fascicu... [more]
HS71L_HUMAN7.070e-2973.33Heat shock 70 kDa protein 1-like OS=Homo sapiens G... [more]
HSP70_SCHMA7.071e-2980.00Heat shock 70 kDa protein homolog OS=Schistosoma m... [more]
HSP70_PYRSA9.203e-2977.78Heat shock 70 kDa protein OS=Pyrenomonas salina GN... [more]
HS71L_BOVIN9.204e-2973.33Heat shock 70 kDa protein 1-like OS=Bos taurus GN=... [more]
HSP72_CAPHI1.198e-2877.78Heat shock-related 70 kDa protein 2 OS=Capra hircu... [more]
HSP76_PIG1.560e-2873.33Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6... [more]
HSP76_HUMAN1.560e-2871.11Heat shock 70 kDa protein 6 OS=Homo sapiens GN=HSP... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-206 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-20_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504716 ID=CF504716; Name=CF504716; organism=Citrus sinensis; type=EST; length=247bp
GTACTTTTGATGTGTCTCTTCTTACCATTGAAGAGGGTATCTTTGAAGTT
AAAGCCACAGCTGGTGATACCCATCTTGGTGGTGAGGATTTTGATAACAG
AATGGTTAACCACCTTTGTGCAAGAGTTCAAAAGAAAGCACAAGAAGGAC
ATTAGTGGTAACCCCAGAGCTCTAAGGAGGTTGAGAACTTCCTGTGAAAG
AGCTAAGAGGACTCTCTCATCAACCGCCCAGACCACCATTGAGATTG
back to top