CF504795

Overview
NameCF504795
Unique NameCF504795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length383
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.413e-33
Identity = 74/126 (58.73%), Postives = 95/126 (75.40%), Query Frame = 3
Query:   12 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSY--KGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            M  F    +  +M  + NIRN+SVIAHVDHGKSTLTD LV  A I++++  G  R  D+R DE +RGITIKS+ ISL++++  D L++Y  +G+ NG E+LINLIDSPGHVDFSSEVTAALR+TDG
Sbjct:    1 MADFHISKVHELMMNQKNIRNISVIAHVDHGKSTLTDCLVIKAKIVSKDSGGG-RYMDSREDEQQRGITIKSSAISLHFQVQKDVLEAYTKEGDTNGTEFLINLIDSPGHVDFSSEVTAALRVTDG 125          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.751e-27
Identity = 62/118 (52.54%), Postives = 85/118 (72.03%), Query Frame = 3
Query:   30 EGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            E L  +   + NIRN +++AHVDHGK+TL DSL+A+ GII+ ++AG VR  D R DE  RGIT+KS+ ISL++++    +     +R   +YLINLIDSPGHVDFSSEV++A R+ DG
Sbjct:    7 EKLVSLQKNQENIRNFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFKV----ISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDG 120          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.511e-27
Identity = 62/126 (49.21%), Postives = 91/126 (72.22%), Query Frame = 3
Query:   12 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKG--ERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            M +  +E  +R+ +    IRN+ ++AHVDHGK++L+DSL+A+ GII+Q +AG +R  D R DE  RGIT++S+ ISLY+ +    L+  +G  E   +E+L+NLIDSPGH+DFSSEV+AA R+ DG
Sbjct:    1 MPRVESETYKRLQNDPSCIRNICIVAHVDHGKTSLSDSLLASNGIISQRLAGKIRFLDARPDEQLRGITMESSAISLYFRV----LRKQEGSDEPLVSEHLVNLIDSPGHIDFSSEVSAASRLCDG 122          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.868e-26
Identity = 63/124 (50.81%), Postives = 81/124 (65.32%), Query Frame = 3
Query:   12 MVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            MV    + + R+     NIRN+ V+AHVDHGK+TL D L+++ GII+  +AG +R  D+R DE  RGIT+KS+ ISL+Y                 EYLINLIDSPGHVDFSSEV+ A+RI DG
Sbjct:    1 MVLSGVDKMIRLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQVRGITMKSSAISLHY------------AEGHEEYLINLIDSPGHVDFSSEVSTAVRICDG 112          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.358e-26
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 3
Query:   63 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            NIRN+ V+AHVDHGK+TL D L+++ GII+  +AG +R  D+R DE  RGIT+KS+ ISL+Y   ++            EYLINLIDSPGHVDFSSEV+ A+RI DG
Sbjct:   18 NIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQIRGITMKSSAISLHYATGNE------------EYLINLIDSPGHVDFSSEVSTAVRICDG 112          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: EF2_AERPE (Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.383e-25
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 3
Query:   15 VKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            VK  +E + +IM     IRN+ +IAHVDHGK+T +DSL+AAAGII++ +AG+  + D    E +RGIT+KS  +SLY+E              G  Y+INLID+PGHVDFS +VT +LR+ DG
Sbjct:    5 VKVVSE-IEKIMRNIDQIRNIGIIAHVDHGKTTTSDSLLAAAGIISERIAGEALVLDYLNVEKQRGITVKSANVSLYHEY------------EGKPYVINLIDTPGHVDFSGKVTRSLRVLDG 114          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: EF2_SULTO (Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA PE=3 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 7.030e-25
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 3
Query:   24 TAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            T E +  +M     +RN+ +IAHVDHGK+T +D+L+AAAGII+Q+VAG+    D  + E +RGIT+K+  ISLY+E+             G  Y+INLID+PGHVDFS  VT +LRI DG
Sbjct:    6 TVEQVLSLMKDITRVRNIGIIAHVDHGKTTTSDTLLAAAGIISQKVAGEALALDYLSVEQQRGITVKAANISLYHEI------------EGKGYVINLIDTPGHVDFSGRVTRSLRILDG 113          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 7.030e-25
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = 3
Query:   18 KFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            K   E   R+MD    IRN+++ AHVDHGK+TLTD+L+A AG+I+++ AG     DT  DE ERGITI +  +S+ +E              G+++LINLID+PGHVDF  +VT A+R  DG
Sbjct:    5 KKIVEQCERLMDNPEQIRNIAIAAHVDHGKTTLTDNLLAGAGMISEDTAGQQLAMDTEEDEQERGITIDAANVSMTHEY------------EGDDHLINLIDTPGHVDFGGDVTRAMRAVDG 114          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.030e-25
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = 3
Query:   18 KFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            K   E   R+MD    IRN+++ AHVDHGK+TLTD+L+A AG+I+++ AG     DT  DE ERGITI +  +S+ +E              G+++LINLID+PGHVDF  +VT A+R  DG
Sbjct:    5 KKIVEQCERLMDNPEQIRNIAIAAHVDHGKTTLTDNLLAGAGMISEDTAGQQLAMDTEEDEQERGITIDAANVSMTHEY------------EGDDHLINLIDTPGHVDFGGDVTRAMRAVDG 114          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: EF2_SULAC (Elongation factor 2 OS=Sulfolobus acidocaldarius GN=fusA PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.199e-24
Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = 3
Query:   24 TAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            T E +  +M     +RN+ +IAHVDHGK+T +D+L+AA+GII+Q+VAG+    D  + E +RGIT+K+  ISLY+E+            +G  Y+INLID+PGHVDFS  VT +LR+ DG
Sbjct:    6 TVEQVLSLMKDVTRVRNIGIIAHVDHGKTTTSDTLLAASGIISQKVAGEALALDYLSVEQQRGITVKAANISLYHEI------------DGKGYVINLIDTPGHVDFSGRVTRSLRVLDG 113          
The following BLAST results are available for this feature:
BLAST of CF504795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF2_ENCCU1.413e-3358.73Elongation factor 2 OS=Encephalitozoon cuniculi GN... [more]
RIA1_SCHPO5.751e-2752.54Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]
RIA1_YEAST7.511e-2749.21Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]
ETUD1_MOUSE4.868e-2650.81Elongation factor Tu GTP-binding domain-containing... [more]
ETUD1_HUMAN6.358e-2656.07Elongation factor Tu GTP-binding domain-containing... [more]
EF2_AERPE5.383e-2548.78Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE... [more]
EF2_SULTO7.030e-2549.17Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA... [more]
EF2_HALSA7.030e-2546.72Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS37.030e-2546.72Elongation factor 2 OS=Halobacterium salinarum (st... [more]
EF2_SULAC1.199e-2447.50Elongation factor 2 OS=Sulfolobus acidocaldarius G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-285 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-21_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504795 ID=CF504795; Name=CF504795; organism=Citrus sinensis; type=EST; length=383bp
AACAAGTCAAGATGGTGAAGTTTACAGCTGAGGGACTCCGTAGGATTATG
GACTTCAAACATAACATCCGTAATATGTCTGTGATTGCTCATGTCGATCA
TGGGAAATCAACTCTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTG
CACAAGAGGTTGCTGGTGATGTGCGTATGACAGATACTCGTGCTGATGAA
GCTGAGCGTGGTATTACAATCAAGTCTACTGGTATCTCTCTCTACTATGA
GATGACTGATGATGCCCTGAAGAGCTACAAGGGAGAACGTAATGGGAATG
AGTACCTGATCAATCTTATTGATTCCCCTGGGCACGTTGACTTCTCATCT
GAGGTGACAGCTGCTCTTCGTATAACTGATGGT
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