CF504795

Overview
NameCF504795
Unique NameCF504795
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length383
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: LEPA_CLOPE (GTP-binding protein lepA OS=Clostridium perfringens GN=lepA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 3
Query:   48 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            MD K  IRN S++AH+DHGKSTL D L+   G + Q    + ++ DT   E ERGITIKS    L Y+             NG EY++NLID+PGHVDF+ EV+ +L   +G
Sbjct:    1 MDKKKYIRNFSIVAHIDHGKSTLADRLLEKTGTLTQREM-EQQVLDTMELEKERGITIKSQAARLIYK-----------RENGEEYILNLIDTPGHVDFTYEVSRSLAACEG 100          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: LEPA_CLOP1 (GTP-binding protein lepA OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=lepA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 3
Query:   48 MDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            MD K  IRN S++AH+DHGKSTL D L+   G + Q    + ++ DT   E ERGITIKS    L Y+             NG EY++NLID+PGHVDF+ EV+ +L   +G
Sbjct:    1 MDKKKYIRNFSIVAHIDHGKSTLADRLLEKTGTLTQREM-EQQVLDTMELEKERGITIKSQAARLIYK-----------RENGEEYILNLIDTPGHVDFTYEVSRSLAACEG 100          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: EF2_PYRIL (Elongation factor 2 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=fusA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 52/126 (41.27%), Postives = 71/126 (56.35%), Query Frame = 3
Query:   15 VKFTAEGLRRIMDFKHN---IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            V+   + L  I+    N   IRN   +AHVDHGK+T TDSL+  AG+++ +VAG     D    E  R +T+K+  ISLY+E              G  YLIN +D+PGHVDF+  VT +LR+ DG
Sbjct:    5 VRIVEKQLDEILAIARNPAQIRNAGTLAHVDHGKTTTTDSLLMGAGLLSPKVAGKALAMDYVPIEQLRQMTVKAANISLYFEY------------GGKPYLINFVDTPGHVDFTGHVTRSLRVMDG 118          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: EF2_PYRCJ (Elongation factor 2 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.379e-19
Identity = 52/126 (41.27%), Postives = 71/126 (56.35%), Query Frame = 3
Query:   15 VKFTAEGLRRIMDFKHN---IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            V+   + L  I+    N   IRN   +AHVDHGK+T TDSL+  AG+++ +VAG     D    E  R +T+K+  ISLY+E              G  YLIN +D+PGHVDF+  VT +LR+ DG
Sbjct:    5 VRIVEKQLDEILAIARNPAQIRNAGTLAHVDHGKTTTTDSLLMGAGLLSPKVAGKALAMDYVPIEQLRQMTVKAANISLYFEY------------GGKPYLINFVDTPGHVDFTGHVTRSLRVMDG 118          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: LEPA_SULDN (GTP-binding protein lepA OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=lepA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 3
Query:   63 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            NIRN S+IAH+DHGKSTL D ++   G ++    G  +M DT   E ERGITIK+  + L Y             ++G  Y++NLID+PGHVDFS EV+ +L  +DG
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRIIQECGSVSDRELGK-QMMDTMDIEKERGITIKAQSVRLDY------------VKDGEHYILNLIDTPGHVDFSYEVSKSLASSDG 96          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: EF2_PYRAE (Elongation factor 2 OS=Pyrobaculum aerophilum GN=fusA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.528e-19
Identity = 50/126 (39.68%), Postives = 72/126 (57.14%), Query Frame = 3
Query:    6 VKMVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            V++V+   + +  I      IRN   +AHVDHGK+T +DSL+  AG+++ +VAG     D    E  R +T+K+  ISLY+E              G  YLIN +D+PGHVDF+  VT +LR+ DG
Sbjct:    5 VRIVEKQLDEILAIAKNPAQIRNAGTLAHVDHGKTTTSDSLLMGAGLLSPKVAGKALAMDYVPIEQLRQMTVKAANISLYFEY------------GGKPYLINFVDTPGHVDFTGHVTRSLRVMDG 118          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: EF2_THENV (Elongation factor 2 OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=fusA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.832e-19
Identity = 50/126 (39.68%), Postives = 72/126 (57.14%), Query Frame = 3
Query:    6 VKMVKFTAEGLRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            V++V+   + +  I      IRN   +AHVDHGK+T +DSL+  AG+++ +VAG     D    E  R +T+K+  ISLY+E              G  YLIN +D+PGHVDF+  VT +LR+ DG
Sbjct:    5 VRVVEKQLDEILAIARNPAQIRNAGTLAHVDHGKTTTSDSLLMGAGLLSPKVAGKALAMDYVPIEQLRQMTVKAANISLYFEY------------GGKPYLINFVDTPGHVDFTGHVTRSLRVMDG 118          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: LEPA_DESPS (GTP-binding protein lepA OS=Desulfotalea psychrophila GN=lepA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.284e-18
Identity = 50/107 (46.73%), Postives = 64/107 (59.81%), Query Frame = 3
Query:   63 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            NIRN S+IAH+DHGKSTL D ++   G+I      D ++ D    E ERGITIKS  + L Y   D           G EY++NL+D+PGHVDFS EV+ AL   +G
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRMIQECGVITARDFQD-QLLDNMDIERERGITIKSQTVCLPYTAKD-----------GKEYILNLVDTPGHVDFSYEVSRALTSCEG 97          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: LEPA_CAMLR (GTP-binding protein lepA OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=lepA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.284e-18
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 3
Query:   63 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            NIRN S+IAH+DHGKSTL D +++  G I+  +  + ++ DT   E ERGITIK+  + L Y+             N  EY++NLID+PGHVDFS EV+ +L   +G
Sbjct:    3 NIRNFSIIAHIDHGKSTLADRIISECGAISDRLMSN-QVMDTMDIEKERGITIKAQSVRLNYKF------------NNEEYVLNLIDTPGHVDFSYEVSRSLASCEG 96          
BLAST of CF504795 vs. ExPASy Swiss-Prot
Match: LEPA_SYNFM (GTP-binding protein lepA OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=lepA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.861e-18
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 3
Query:   66 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDDALKSYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDG 383
            IRN S+IAH+DHGKSTL D L+  AG++      D ++ D    E ERGITIKS  ++L Y             RNG E  +NLID+PGHVDFS EV+ AL   +G
Sbjct:    4 IRNFSIIAHIDHGKSTLADRLIQRAGLVTDRQFRD-QILDNMDIERERGITIKSQTVTLPYR-----------SRNGEEVELNLIDTPGHVDFSYEVSRALASCEG 97          
The following BLAST results are available for this feature:
BLAST of CF504795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEPA_CLOPE3.379e-1945.54GTP-binding protein lepA OS=Clostridium perfringen... [more]
LEPA_CLOP13.379e-1945.54GTP-binding protein lepA OS=Clostridium perfringen... [more]
EF2_PYRIL3.379e-1941.27Elongation factor 2 OS=Pyrobaculum islandicum (str... [more]
EF2_PYRCJ3.379e-1941.27Elongation factor 2 OS=Pyrobaculum calidifontis (s... [more]
LEPA_SULDN7.528e-1945.79GTP-binding protein lepA OS=Sulfurimonas denitrifi... [more]
EF2_PYRAE7.528e-1939.68Elongation factor 2 OS=Pyrobaculum aerophilum GN=f... [more]
EF2_THENV9.832e-1939.68Elongation factor 2 OS=Thermoproteus neutrophilus ... [more]
LEPA_DESPS1.284e-1846.73GTP-binding protein lepA OS=Desulfotalea psychroph... [more]
LEPA_CAMLR1.284e-1844.86GTP-binding protein lepA OS=Campylobacter lari (st... [more]
LEPA_SYNFM2.861e-1848.11GTP-binding protein lepA OS=Syntrophobacter fumaro... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-285 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-21_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504795 ID=CF504795; Name=CF504795; organism=Citrus sinensis; type=EST; length=383bp
AACAAGTCAAGATGGTGAAGTTTACAGCTGAGGGACTCCGTAGGATTATG
GACTTCAAACATAACATCCGTAATATGTCTGTGATTGCTCATGTCGATCA
TGGGAAATCAACTCTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTG
CACAAGAGGTTGCTGGTGATGTGCGTATGACAGATACTCGTGCTGATGAA
GCTGAGCGTGGTATTACAATCAAGTCTACTGGTATCTCTCTCTACTATGA
GATGACTGATGATGCCCTGAAGAGCTACAAGGGAGAACGTAATGGGAATG
AGTACCTGATCAATCTTATTGATTCCCCTGGGCACGTTGACTTCTCATCT
GAGGTGACAGCTGCTCTTCGTATAACTGATGGT
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