CF504799

Overview
NameCF504799
Unique NameCF504799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.275e-22
Identity = 48/83 (57.83%), Postives = 60/83 (72.29%), Query Frame = 1
Query:  133 TGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAPG 381
            TGT    +G I++ ++F+ +L  RNDARC A  FYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HETTGG     G
Sbjct:   19 TGTLAQNVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTLSPDG 101          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.241e-21
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  148 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGG 363
            G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKREIAAF AQT HETTGG
Sbjct:   50 GGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGG 121          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.241e-21
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  148 GELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGG 363
            G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKREIAAF AQT HETTGG
Sbjct:   72 GGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGG 143          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.764e-21
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  148 GELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FPGFG +G+ T RKREIAAF AQT HETTGGW  AP
Sbjct:   66 GDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAP 143          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.159e-21
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 1
Query:  148 GELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FPGFG +G+ T RKREIAAF AQT HETTGGW  AP
Sbjct:   70 GDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAP 147          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 6.159e-21
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  145 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            GG L  +IS + F ++L +RND  C  + FYTYDAF+ AA+AFP F N G+   +KREIAAF  QT HETTGGW  AP
Sbjct:   65 GGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAP 142          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.792e-20
Identity = 48/83 (57.83%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  130 ATGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            A+G   G +G II+R MFE +L +R D  C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP
Sbjct:   20 ASGQQAG-VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAP 100          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.214e-20
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  145 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            G  +  IIS  +F+ +L +RND  C A+GFYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGW  AP
Sbjct:   73 GSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAP 150          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.981e-19
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  154 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWTDAP 378
            +  +IS+ +FE +L +RND  C A+GFYTY+AFI A + F  FG +G+   R +EIAAF AQT HETTGGW  AP
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAP 79          
BLAST of CF504799 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.587e-19
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  130 ATGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQTGHETTGG 363
            A+G     +G +I++ +F  +LP R++++CPARGFYTYDAFI AA +FP FG SG    + +RE+AAFF QT HETTGG
Sbjct:   24 ASGAAAQGVGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG 102          
The following BLAST results are available for this feature:
BLAST of CF504799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CHIT_PETHY7.275e-2257.83Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI2_GOSHI1.241e-2165.28Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI1.241e-2165.28Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI3_SOLTU2.764e-2160.26Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC6.159e-2158.97Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI2_PEA6.159e-2156.41Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI11_ORYSJ1.792e-2057.83Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI3_ORYSJ5.214e-2055.13Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHID_SOLLC1.981e-1954.67Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI8_ORYSJ2.587e-1954.43Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-289 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-21_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504799 ID=CF504799; Name=CF504799; organism=Citrus sinensis; type=EST; length=381bp
ATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACTAATTTTCTC
TCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATTGTGGAAGCC
GGCGTTGTGTGCGGTGAACGTGATACCTGGCCACCGGGACGGATGGCGGT
GAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGCTTCCGTA
TAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTT
TTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAA
ACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGA
AACTACTGGGGGATGGACCGATGCACCTGGT
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