CF504811

Overview
NameCF504811
Unique NameCF504811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length370
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504811 vs. ExPASy Swiss-Prot
Match: Y4245_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20450 OS=Arabidopsis thaliana GN=At4g20450 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.676e-11
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 1
Query:    1 VVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQT-IEWAMRLRVALYIAEALDYCSSEGRP--LYHDLNAYRVLFD 369
            VVY G +   NDN + +AVK  ++ +    KQF  E   + ++ H  L  L+GYC +G   +L+ EYM N  L +HL    +++ + W  RLR+A   A+ L+Y     +P  ++ D+ +  +L D
Sbjct:  604 VVYHGNV---NDNEQ-VAVKVLSESSAQGYKQFKAEVDLLLRVHHINLVTLVGYCDEGQHLVLIYEYMSNGNLKQHLSGENSRSPLSWENRLRIAAETAQGLEYLHIGCKPPMIHRDIKSMNILLD 725          
BLAST of CF504811 vs. ExPASy Swiss-Prot
Match: WAKLF_ARATH (Wall-associated receptor kinase-like 6 OS=Arabidopsis thaliana GN=WAKL6 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.676e-11
Identity = 43/127 (33.86%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    4 VYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLF---HWENQTIEWAMRLRVALYIAEALDYC-SSEGRPLYH-DLNAYRVLFD 369
            VYKG L +G    R +AVK+         ++F +E   + ++ H+ +  L+G C   +  +LV EY+PN  L K L       + T+ W +RLR+A+ IA AL Y  S+   P+YH D+    +L D
Sbjct:  446 VYKGMLAEG----RIVAVKRSKVVGEGKMEEFINEVVLLSQINHRNIVKLLGCCLGTEVPVLVYEYIPNGDLFKRLHEKSESNDYTMTWEVRLRIAIEIAGALSYMHSAASIPIYHRDIKTTNILLD 568          
BLAST of CF504811 vs. ExPASy Swiss-Prot
Match: WAKLA_ARATH (Wall-associated receptor kinase-like 1 OS=Arabidopsis thaliana GN=WAKL1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.676e-11
Identity = 42/125 (33.60%), Postives = 69/125 (55.20%), Query Frame = 1
Query:    4 VYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLF-HWENQTIEWAMRLRVALYIAEALDYC-SSEGRPLYH-DLNAYRVLFD 369
            VYKG L DG+     +AVK+         ++F +E   + ++ H+ +  L+G C + +  +LV EY+PN  L K L    ++ T+ W +RLR+A+ IA AL Y  S+   P++H D+    +L D
Sbjct:  443 VYKGMLVDGSI----VAVKRSKVVDEDKMEEFINEIVLLSQINHRNIVKLLGCCLETEVPILVYEYIPNGDLFKRLHDESDDYTMTWEVRLRIAIEIAGALTYMHSAASFPIFHRDIKTTNILLD 563          
BLAST of CF504811 vs. ExPASy Swiss-Prot
Match: SRF2_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsis thaliana GN=SRF2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.676e-11
Identity = 41/125 (32.80%), Postives = 64/125 (51.20%), Query Frame = 1
Query:    4 VYKGRLQDGNDNR-RWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSEGRP--LYHDLNAYRVLFD 369
            VY+ +L DG     R I +   + H   + +QF +      KLRH  +  L+G+C +  E LLV EY+ + +L   +     + + W +RLR+A+ +A ALDY  S   P   + DL A  +L D
Sbjct:  429 VYRAKLPDGQFAVVRNIPMSSLSLH---EEEQFTEVLQTASKLRHPNIVTLLGFCIENGEHLLVYEYVGHLSLYNAMHDEVYKPLSWGLRLRIAIGVARALDYLHSSFCPPIAHSDLKATNILLD 550          
BLAST of CF504811 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.676e-11
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    4 VYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQT---IEWAMRLRVALYIAEALDYCSSEGRP--LYHDLNAYRVLFD 369
            V++G L   + ++  IAVKK T ++    ++F  E   +G+LRHK L NL G+C   ++ LL+ +Y+PN +L   L+    Q+   + W  R ++A  IA  L Y   E     ++ D+    VL +
Sbjct:  375 VFRGNLSSPSSDQ--IAVKKITPNSMQGVREFIAEIESLGRLRHKNLVNLQGWCKQKNDLLLIYDYIPNGSLDSLLYSRPRQSGVVLSWNARFKIAKGIASGLLYLHEEWEKVVIHRDIKPSNVLIE 499          
BLAST of CF504811 vs. ExPASy Swiss-Prot
Match: BRL1_ARATH (Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.676e-11
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 1
Query:    4 VYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQT----IEWAMRLRVALYIAEALDYCSSEGRP--LYHDLNAYRVLFD 369
            VYK +L+DG+     +A+KK  +      ++F  E   +GK++H+ L  L+GYC  G+ERLLV EYM   +L   L    ++     + WA R ++A+  A  L +      P  ++ D+ +  VL D
Sbjct:  873 VYKAQLRDGSV----VAIKKLIRITGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKWGSLETVLHEKSSKKGGIYLNWAARKKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLD 996          
BLAST of CF504811 vs. ExPASy Swiss-Prot
Match: BRI1_SOLPE (Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.676e-11
Identity = 41/127 (32.28%), Postives = 68/127 (53.54%), Query Frame = 1
Query:    4 VYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQT---IEWAMRLRVALYIAEALDYCSSEGRP--LYHDLNAYRVLFD 369
            VYK +L+DG+     +A+KK    +    ++F  E   +GK++H+ L  L+GYC  G+ERLLV EYM   +L + + H   +T   + W  R ++A+  A  L +      P  ++ D+ +  VL D
Sbjct:  902 VYKAQLKDGSV----VAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSL-EDVLHDRKKTGIKLNWPARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLD 1023          
The following BLAST results are available for this feature:
BLAST of CF504811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
Y4245_ARATH9.676e-1132.54Probable LRR receptor-like serine/threonine-protei... [more]
WAKLF_ARATH9.676e-1133.86Wall-associated receptor kinase-like 6 OS=Arabidop... [more]
WAKLA_ARATH9.676e-1133.60Wall-associated receptor kinase-like 1 OS=Arabidop... [more]
SRF2_ARATH9.676e-1132.80Protein STRUBBELIG-RECEPTOR FAMILY 2 OS=Arabidopsi... [more]
LRKA2_ARATH9.676e-1131.50Lectin-domain containing receptor kinase A4.2 OS=A... [more]
BRL1_ARATH9.676e-1132.03Serine/threonine-protein kinase BRI1-like 1 OS=Ara... [more]
BRI1_SOLPE9.676e-1132.28Systemin receptor SR160 OS=Solanum peruvianum PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-302 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-22_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504811 ID=CF504811; Name=CF504811; organism=Citrus sinensis; type=EST; length=370bp
GTCGTCTATAAAGGCCGCCTTCAAGACGGAAATGATAACCGCCGTTGGAT
CGCCGTTAAAAAATTCACCAAACATGCCTGGCCCGATCCCAAACAGTTTG
CTGATGAGGCTTGGGGTGTTGGGAAGCTGAGGCATAAGAGGCTGGCGAAT
TTGATTGGCTATTGTTGTGATGGTGATGAGAGATTGCTGGTGGCTGAGTA
CATGCCAAATGATACTCTTGCTAAACATTTATTTCACTGGGAGAATCAAA
CCATTGAGTGGGCTATGCGTCTAAGAGTTGCTCTGTATATTGCTGAAGCT
TTAGATTATTGCAGTAGTGAAGGACGTCCATTATACCATGATTTGAATGC
TTATAGGGTTCTCTTTGATG
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