CF504816

Overview
NameCF504816
Unique NameCF504816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_ASPNC (Nucleolar protein 58 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=nop58 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.758e-43
Identity = 89/166 (53.61%), Postives = 122/166 (73.49%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFA-------EKNTTIFGEKLREQVEERL 488
            A   SMG ++S  DL ++Q  A++V+  +EYR++L  YL  +MN IAPNL +L+G++VGARLI+HAGSLTNL+K P+STLQILGAEKALFRALKT+ +TPKYGLI+H+S IG+A+ +NKG+MAR LA K S+  R+D  A       E++    G + R  +E +L
Sbjct:  240 AADRSMGTEISQEDLEHIQALAEQVVGFAEYRQQLAGYLTARMNAIAPNLTALVGDLVGARLIAHAGSLTNLSKSPASTLQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARVLAAKASLGLRVDALAEWDDDATEEDKAALGTEARYNLERKL 405          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_PICGU (Nucleolar protein 58 OS=Pichia guilliermondii GN=NOP58 PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 2.296e-43
Identity = 83/161 (51.55%), Postives = 126/161 (78.26%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEK--NTTIFGEKLREQVEERL 488
            A + SMG +++ +DL N++  A++++D + YR++L  YL  +M  IAPNL +L+GE++GARLI+HAGSLT+L+K P+ST+QILGAEKALFRALKT+ +TPKYGL++H+S +G+A+ +NKG++AR LA K ++A R D  +E+  ++  FG  +R +VE RL
Sbjct:  238 AAEVSMGTEITPIDLENIKALAEQIVDFAAYREQLSNYLSARMKAIAPNLTALVGELIGARLIAHAGSLTSLSKAPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVALRYDSLSEERDDSGDFGFSVRAKVESRL 398          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_LODEL (Nucleolar protein 58 OS=Lodderomyces elongisporus GN=NOP58 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.296e-43
Identity = 85/161 (52.80%), Postives = 125/161 (77.64%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEK--NTTIFGEKLREQVEERL 488
            A + SMG +++  DL N++  A++++D + YR++L  YL ++M  IAPNL +++G++VGAR I+HAGSLT+LAK P+ST+QILGAEKALFRALKT+ +TPKYG+I+H+S +G+AS +NKGR+AR LA K +++ R DCF E+  ++  FG   R +VE RL
Sbjct:  238 AAEVSMGTEITENDLENIKALAEQIVDFAAYREQLSNYLSSRMKAIAPNLTAMVGDLVGARFIAHAGSLTSLAKAPASTIQILGAEKALFRALKTKHDTPKYGIIYHASLVGQASGKNKGRIARTLAAKAALSVRYDCFDEERDDSDSFGLDNRGKVESRL 398          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_COCIM (Nucleolar protein 58 OS=Coccidioides immitis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.296e-43
Identity = 87/154 (56.49%), Postives = 115/154 (74.68%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQ 473
            A   SMG D+S  DL N+Q  A++V+  +EYR++L  YL  +M  IAPNL +L+GE+VGARLI+HAGSL NL+K P+ST+QILGAEKALFRALKT+ +TPKYGLI+H+S IG+A+ +NKG+MAR LA K +I  R+D  AE      G +  E+
Sbjct:  240 AANRSMGTDISNEDLENIQCLAEQVVGFAEYRQQLASYLTARMTAIAPNLTALVGELVGARLIAHAGSLVNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARVLAAKAAIGLRVDALAEWEKDADGNEPTEE 393          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_CANGA (Nucleolar protein 58 OS=Candida glabrata GN=NOP58 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.998e-43
Identity = 86/161 (53.42%), Postives = 124/161 (77.02%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAE--KNTTIFGEKLREQVEERL 488
            A + SMG +++ VDL+N++  A ++++ + YR++L  YL ++M  IAPNL  L+GE+VGARLI+HAGSL +LAK P+ST+QILGAEKALFRALKT+ +TPKYGL++H+S +G+AS RNKG++AR LA K ++A R D  AE   ++   G ++R +VE RL
Sbjct:  238 AAEVSMGTEITDVDLINIRALADQIVEFAAYREQLSNYLSSRMKAIAPNLTQLVGELVGARLIAHAGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQASGRNKGKIARVLAAKAAVALRYDALAEDRDDSGDIGLEVRAKVENRL 398          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP5A_ARATH (Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 3.916e-43
Identity = 87/160 (54.37%), Postives = 119/160 (74.38%), Query Frame = 3
Query:    9 EAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            EA   SMG ++S +DL++++    +V+ L+EYR +LY+YL ++MN IAPNL +L+GE+VGARLISH GSL NLAK P ST+QILGAEKALFRALKT+  TPKYGLIFH+S +G+A+ +NKG+++R LA K  +A R D   +      G + R ++E RL
Sbjct:  234 EAAVISMGTEVSDLDLLHIRELCDQVLSLAEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASVVGQAAPKNKGKISRSLAAKSVLAIRCDALGDSQDNTMGVENRLKLEARL 393          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP5B_ARATH (Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 6.679e-43
Identity = 85/160 (53.12%), Postives = 120/160 (75.00%), Query Frame = 3
Query:    9 EAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            +A   SMG ++S +DL++++    +V+ LSEYR +LY+YL ++MN IAPNL +L+GE+VGARLISH GSL NL+K P ST+QILGAEKALFRALKT+  TPKYGLIFH+S +G+A+ ++KG+++R LA K  +A R+D   +      G + R ++E RL
Sbjct:  235 DAAVISMGTEVSDLDLLHIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTALVGELVGARLISHGGSLLNLSKQPGSTVQILGAEKALFRALKTKHATPKYGLIFHASLVGQAAPKHKGKISRSLAAKTVLAIRVDALGDSQDNTMGLENRAKLEARL 394          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_AJECN (Nucleolar protein 58 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.538e-42
Identity = 86/159 (54.09%), Postives = 115/159 (72.33%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            A   SMG ++S  DL N+Q  A+ V+  S YR++L  YL  +M  IAPNL +L+GE+VGARLI+HAGSL NL+K P+ST+QILGAEKALFRALKT+ +TPKYGLI+H+S IG+A+ +NKG+MARYLA K +I  R+D   +      G +  E+ +  L
Sbjct:  239 AADRSMGTEISNEDLDNIQALAEEVIGFSTYRQQLASYLAARMTAIAPNLTALVGELVGARLIAHAGSLVNLSKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLIGQATGKNKGKMARYLAAKAAIGLRVDALTDWPVDADGNEPTEEEKAAL 397          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_KLULA (Nucleolar protein 58 OS=Kluyveromyces lactis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.315e-42
Identity = 83/161 (51.55%), Postives = 124/161 (77.02%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAE--KNTTIFGEKLREQVEERL 488
            A + SMG +++ VDL+N++  A+++++ + YR++L  YL ++M  IAPNL  L+GE+VGARLI+H+GSL +LAK P+ST+QILGAEKALFRALKT+ +TPKYGL++H+S +G+AS +NKG++AR LA K +++ R D  AE   ++   G + R +VE RL
Sbjct:  238 AAEVSMGTEITPVDLINIKCLAEQIVEFAAYREQLSNYLSSRMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQASGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVESRL 398          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_ASHGO (Nucleolar protein 58 OS=Ashbya gossypii GN=NOP58 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 5.654e-42
Identity = 83/164 (50.61%), Postives = 124/164 (75.61%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAE--KNTTIFGEKLREQVEERL 488
            +  A + SMG +++ VDL N++  A+++++ + YR++L  YL ++M  IAPNL  L+GE+VGARLI+HAGSL +LAK P+ST+QILGAEKALFRALKT+ +TPKYGL++H+S +G+A+ +NKG++AR LA K +++ R D  AE   ++   G + R +VE RL
Sbjct:  235 VKSAAEVSMGTEITQVDLDNIKSLAEQIVEFAAYREQLSNYLSSRMKAIAPNLTQLVGELVGARLIAHAGSLVSLAKAPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLEARAKVESRL 398          
The following BLAST results are available for this feature:
BLAST of CF504816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
NOP58_ASPNC1.758e-4353.61Nucleolar protein 58 OS=Aspergillus niger (strain ... [more]
NOP58_PICGU2.296e-4351.55Nucleolar protein 58 OS=Pichia guilliermondii GN=N... [more]
NOP58_LODEL2.296e-4352.80Nucleolar protein 58 OS=Lodderomyces elongisporus ... [more]
NOP58_COCIM2.296e-4356.49Nucleolar protein 58 OS=Coccidioides immitis GN=NO... [more]
NOP58_CANGA2.998e-4353.42Nucleolar protein 58 OS=Candida glabrata GN=NOP58 ... [more]
NOP5A_ARATH3.916e-4354.38Probable nucleolar protein 5-1 OS=Arabidopsis thal... [more]
NOP5B_ARATH6.679e-4353.13Probable nucleolar protein 5-2 OS=Arabidopsis thal... [more]
NOP58_AJECN2.538e-4254.09Nucleolar protein 58 OS=Ajellomyces capsulata (str... [more]
NOP58_KLULA3.315e-4251.55Nucleolar protein 58 OS=Kluyveromyces lactis GN=NO... [more]
NOP58_ASHGO5.654e-4250.61Nucleolar protein 58 OS=Ashbya gossypii GN=NOP58 P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-307 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-22_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504816 ID=CF504816; Name=CF504816; organism=Citrus sinensis; type=EST; length=492bp
AGATTGTGGAGGCTGGCAAAGCATCAATGGGACAGGATTTGTCTGCAGTT
GACTTAGTTAATGTCCAGATGTTTGCTCAAAGGGTGATGGACCTCTCTGA
GTACAGGAAGAAACTTTATGAGTATCTGGTTACTAAAATGAATGATATTG
CACCCAATTTGGCCTCCTTGATTGGTGAAGTTGTTGGGGCTCGGTTGATT
TCTCATGCTGGTAGTCTCACAAATCTGGCTAAGTGTCCATCTTCTACCCT
TCAGATCCTTGGTGCTGAGAAAGCACTCTTCAGAGCATTAAAAACTCGAG
GAAACACACCAAAGTATGGTCTGATTTTCCACTCATCTTTCATTGGTCGA
GCTTCTGCCCGGAACAAGGGCCGTATGGCTCGATACCTTGCAAACAAGTG
TTCTATTGCATCTCGCATTGACTGTTTTGCAGAAAAAAACACTACCATTT
TTGGGGAGAAACTTCGTGAACAAGTTGAAGAGCGGCTGGACT
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