CF504816

Overview
NameCF504816
Unique NameCF504816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_SCLS1 (Nucleolar protein 58 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.806e-41
Identity = 80/144 (55.56%), Postives = 113/144 (78.47%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAE 434
            I  A + SMG +++  DL N+++ A++V+  +EYR++L  YL  +M  IAPNL  L+GE+VGARLI+HAGSL NLAK P+ST+QILGAEKALFRALKT+ +TPKYGLI+H+S +G+A+ +NKG++AR LA K +I  R+D  ++
Sbjct:  237 IKAAAEVSMGTEITEEDLDNIKLLAEQVVGFTEYRQQLSSYLSARMQAIAPNLTELVGELVGARLIAHAGSLMNLAKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLVGQATGKNKGKIARMLAAKAAIGLRVDALSD 380          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_RAT (Nucleolar protein 58 OS=Rattus norvegicus GN=Nop58 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 2.806e-41
Identity = 83/159 (52.20%), Postives = 119/159 (74.84%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            A + SMG ++S  D+ N+     +V+++SEYR +LYEYL  +M  IAPN+  ++GE+VGARLI+HAGSL NLAK  +ST+QILGAEKALFRALK+R +TPKYGLI+H+S +G+ S ++KG+++R LA K  +A R D F E +++  G + R ++E RL
Sbjct:  237 AAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGAENRAKLEARL 395          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_MOUSE (Nucleolar protein 58 OS=Mus musculus GN=Nop58 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.665e-41
Identity = 83/159 (52.20%), Postives = 120/159 (75.47%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            A + SMG ++S  D+ N+     +V+++SEYR +LYEYL  +M  IAPN+  ++GE+VGARLI+HAGSL NLAK  +ST+QILGAEKALFRALK+R +TPKYGLI+H+S +G++S ++KG+++R LA K  +A R D F E +++  G + R ++E RL
Sbjct:  237 AAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQSSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGIENRAKLEARL 395          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_MACFA (Nucleolar protein 58 OS=Macaca fascicularis GN=NOP58 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.665e-41
Identity = 83/159 (52.20%), Postives = 119/159 (74.84%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            A + SMG ++S  D+ N+     +V+++SEYR +LYEYL  +M  IAPN+  ++GE+VGARLI+HAGSL NLAK  +ST+QILGAEKALFRALK+R +TPKYGLI+H+S +G+ S ++KG+++R LA K  +A R D F E +++  G + R ++E RL
Sbjct:  237 AAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARL 395          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_HUMAN (Nucleolar protein 58 OS=Homo sapiens GN=NOP58 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 3.665e-41
Identity = 83/159 (52.20%), Postives = 119/159 (74.84%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            A + SMG ++S  D+ N+     +V+++SEYR +LYEYL  +M  IAPN+  ++GE+VGARLI+HAGSL NLAK  +ST+QILGAEKALFRALK+R +TPKYGLI+H+S +G+ S ++KG+++R LA K  +A R D F E +++  G + R ++E RL
Sbjct:  237 AAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNRMMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKYGLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEARL 395          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_VANPO (Nucleolar protein 58 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 4.787e-41
Identity = 82/161 (50.93%), Postives = 121/161 (75.16%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAE--KNTTIFGEKLREQVEERL 488
            A + SMG +++  DL N++  A +++D + YR++L  YL ++M  IAPNL  L+GE+VGARLI+H+GSL +LAK P+ST+QILGAEKALFRALKT+ +TPKYGL++H+S +G+A+ +NKG++AR LA K +++ R D  AE   ++   G + R +VE RL
Sbjct:  238 AAEVSMGTEITETDLDNIKALADQIVDFAAYREQLSNYLSSRMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLEARAKVENRL 398          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_NEUCR (Nucleolar protein 58 OS=Neurospora crassa GN=nop-58 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.252e-41
Identity = 83/141 (58.87%), Postives = 107/141 (75.89%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAE 434
            A   SMG ++S  DL N++  A+RV+D S YRK+L +YL  +M  IAPN+  L+G +VGARLI+HAGS+ NLAK P ST+QILGAEKALFRALKT+  TPKYGLI+H+S +G+AS  NKG+MAR LA+K ++  R D  AE
Sbjct:  240 AADISMGTEVSEEDLQNIKYLAERVIDYSVYRKQLSDYLENRMRAIAPNMTELVGALVGARLIAHAGSVMNLAKNPGSTIQILGAEKALFRALKTKHATPKYGLIYHASLVGQASGANKGKMARQLASKVALGVRTDALAE 380          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_BOTFB (Nucleolar protein 58 OS=Botryotinia fuckeliana (strain B05.10) GN=nop58 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 6.252e-41
Identity = 79/144 (54.86%), Postives = 113/144 (78.47%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAE 434
            I  A + SMG +++  DL N+++ A++V+  +EYR++L  YL  +M  IAPNL  L+G++VGARLI+HAGSL NLAK P+ST+QILGAEKALFRALKT+ +TPKYGLI+H+S +G+A+ +NKG++AR LA K +I  R+D  ++
Sbjct:  237 IKAAAEVSMGTEITQEDLDNIKLLAEQVVGFTEYRQQLSSYLSARMQAIAPNLTELVGDLVGARLIAHAGSLMNLAKSPASTIQILGAEKALFRALKTKHDTPKYGLIYHASLVGQATGKNKGKIARMLAAKAAIGLRVDALSD 380          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_USTMA (Nucleolar protein 58 OS=Ustilago maydis GN=NOP58 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.066e-40
Identity = 84/165 (50.91%), Postives = 120/165 (72.73%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNT------TIFGEKLREQVEERL 488
            A + SMG ++S  DL ++     +V+ +++YR +LY+YL  +M  IAPNL +L+G++VGARLISHAGSL NLAK P+ST+QILGAEKALFRALKT+ +TPKYGLI+HSS +G+A  + KG+MAR +A K +++ R+D  A+ +T         G + R ++E RL
Sbjct:  248 AAEISMGTEISETDLEHIWSLCDQVISITQYRTQLYQYLQNRMAAIAPNLTALVGDLVGARLISHAGSLMNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHSSLVGQAPQKLKGKMARMVATKAALSIRLDALADADTKSDEGAPTVGIEARAKLESRL 412          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_YEAST (Nucleolar protein 58 OS=Saccharomyces cerevisiae GN=NOP58 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.819e-40
Identity = 81/161 (50.31%), Postives = 120/161 (74.53%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAE--KNTTIFGEKLREQVEERL 488
            A + SMG +++  DL N+   A+++++ + YR++L  YL  +M  IAPNL  L+GE+VGARLI+H+GSL +LAK P+ST+QILGAEKALFRALKT+ +TPKYGL++H+S +G+A+ +NKG++AR LA K +++ R D  AE   ++   G + R +VE RL
Sbjct:  238 AAEVSMGTEITQTDLDNINALAEQIVEFAAYREQLSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRL 398          
The following BLAST results are available for this feature:
BLAST of CF504816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
NOP58_SCLS12.806e-4155.56Nucleolar protein 58 OS=Sclerotinia sclerotiorum (... [more]
NOP58_RAT2.806e-4152.20Nucleolar protein 58 OS=Rattus norvegicus GN=Nop58... [more]
NOP58_MOUSE3.665e-4152.20Nucleolar protein 58 OS=Mus musculus GN=Nop58 PE=1... [more]
NOP58_MACFA3.665e-4152.20Nucleolar protein 58 OS=Macaca fascicularis GN=NOP... [more]
NOP58_HUMAN3.665e-4152.20Nucleolar protein 58 OS=Homo sapiens GN=NOP58 PE=1... [more]
NOP58_VANPO4.787e-4150.93Nucleolar protein 58 OS=Vanderwaltozyma polyspora ... [more]
NOP58_NEUCR6.252e-4158.87Nucleolar protein 58 OS=Neurospora crassa GN=nop-5... [more]
NOP58_BOTFB6.252e-4154.86Nucleolar protein 58 OS=Botryotinia fuckeliana (st... [more]
NOP58_USTMA1.066e-4050.91Nucleolar protein 58 OS=Ustilago maydis GN=NOP58 P... [more]
NOP58_YEAST1.819e-4050.31Nucleolar protein 58 OS=Saccharomyces cerevisiae G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-307 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-22_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504816 ID=CF504816; Name=CF504816; organism=Citrus sinensis; type=EST; length=492bp
AGATTGTGGAGGCTGGCAAAGCATCAATGGGACAGGATTTGTCTGCAGTT
GACTTAGTTAATGTCCAGATGTTTGCTCAAAGGGTGATGGACCTCTCTGA
GTACAGGAAGAAACTTTATGAGTATCTGGTTACTAAAATGAATGATATTG
CACCCAATTTGGCCTCCTTGATTGGTGAAGTTGTTGGGGCTCGGTTGATT
TCTCATGCTGGTAGTCTCACAAATCTGGCTAAGTGTCCATCTTCTACCCT
TCAGATCCTTGGTGCTGAGAAAGCACTCTTCAGAGCATTAAAAACTCGAG
GAAACACACCAAAGTATGGTCTGATTTTCCACTCATCTTTCATTGGTCGA
GCTTCTGCCCGGAACAAGGGCCGTATGGCTCGATACCTTGCAAACAAGTG
TTCTATTGCATCTCGCATTGACTGTTTTGCAGAAAAAAACACTACCATTT
TTGGGGAGAAACTTCGTGAACAAGTTGAAGAGCGGCTGGACT
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