CF504816
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_YEAS7 (Nucleolar protein 58 OS=Saccharomyces cerevisiae (strain YJM789) GN=NOP58 PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 1.819e-40 Identity = 81/161 (50.31%), Postives = 120/161 (74.53%), Query Frame = 3 Query: 12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAE--KNTTIFGEKLREQVEERL 488 A + SMG +++ DL N+ A+++++ + YR++L YL +M IAPNL L+GE+VGARLI+H+GSL +LAK P+ST+QILGAEKALFRALKT+ +TPKYGL++H+S +G+A+ +NKG++AR LA K +++ R D AE ++ G + R +VE RL Sbjct: 238 AAEVSMGTEITQTDLDNINALAEQIVEFAAYREQLSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRL 398
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_CRYNE (Nucleolar protein 58 OS=Cryptococcus neoformans GN=NOP58 PE=3 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 9.027e-40 Identity = 79/144 (54.86%), Postives = 111/144 (77.08%), Query Frame = 3 Query: 12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNT 443 A + SMG ++S D+ ++ +V+ +SEYR +L EYL +M IAPNL +L+GE+VGARLISHAGSL NLAK P+ST+QILGAEKALFRALKT+ +TPKYGLI+H+S IG+A + KG+MAR +A K +++ R+D ++ ++ Sbjct: 248 AAELSMGTEISDSDMTHIHSLCDQVISISEYRTQLSEYLRNRMQAIAPNLTALVGELVGARLISHAGSLMNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAPQKLKGKMARMVATKAALSIRVDALSDADS 391
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_DICDI (Nucleolar protein 58 OS=Dictyostelium discoideum GN=nop58 PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 4.480e-39 Identity = 80/161 (49.69%), Postives = 112/161 (69.57%), Query Frame = 3 Query: 3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEER 485 + EA + SMG ++S DL ++ + + + Y +L EYL ++M IAPNL L+GE+VGARLI AGSL NLAK P+ST+QILGAEKALFRALKT+ NTPKYGLI+++ +G AS +NKG+M+R LA K ++++R D E + T +G + V+ R Sbjct: 236 VKEAAQISMGTEISPEDLDHIFALCDQFLSIQAYHTELTEYLKSRMEAIAPNLTILVGEIVGARLICRAGSLMNLAKYPASTIQILGAEKALFRALKTKHNTPKYGLIYNAKIVGEASLKNKGKMSRVLAAKAALSARFDALCEVSDTSYGIAYKGAVDRR 396
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP5C_ARATH (Putative nucleolar protein 5-3 OS=Arabidopsis thaliana GN=NOP5-3 PE=2 SV=2) HSP 1 Score: 148.673 bits (374), Expect = 1.349e-35 Identity = 77/160 (48.12%), Postives = 109/160 (68.12%), Query Frame = 3 Query: 9 EAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488 EA S ++S +DL+++Q +V+ ++E + L + L KMN IAPNL +L+GE+VGARLISH GSL NL+K P ST+QILGAEK L++ALKT+ TPKYGLI+H+ + +A+ NKG++AR LA K ++A R D F G + R ++E RL Sbjct: 206 EASMVSTRTEVSDLDLMHIQELCDQVLSIAEDKTLLCDDLKNKMNKIAPNLTALVGELVGARLISHCGSLWNLSKLPWSTIQILGAEKTLYKALKTKQATPKYGLIYHAPLVRQAAPENKGKIARSLAAKSALAIRCDAFGNGQDNTMGVESRLKLEARL 365
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: Y694_METJA (Uncharacterized NOP5 family protein MJ0694 OS=Methanocaldococcus jannaschii GN=MJ0694 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 6.069e-28 Identity = 72/160 (45.00%), Postives = 97/160 (60.62%), Query Frame = 3 Query: 3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEE 482 I EA K SMG +L DL + FA+ + L E RK+LY YL MN+ APN+ L G +GARLI AG L LAK P+ST+Q+LGAEKALF L+ PK+G+I++ I + +G++AR LA K +IA+R D + EKL ++VEE Sbjct: 198 IAEAAKNSMGGELEDYDLDVIVKFAEEINHLYEKRKELYNYLEKLMNEEAPNITKLAGVSLGARLIGLAGGLEKLAKMPASTIQVLGAEKALFAHLRMGVEPPKHGIIYNHPLIQGSPHWQRGKIARALACKLAIAARADYVGDYIADELLEKLNKRVEE 357
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: PRP31_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 4.213e-21 Identity = 48/156 (30.77%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 24 SMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD 491 + GQ LS +L ++ ++L+ + ++YEY+ ++M+ IAPNL+ +IG A+++ AG LTNL+K P+ + +LGA++ + P G I+HS + + + AR +A KC++A+R+D F E G +L++++E + D Sbjct: 174 TQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFD 329
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: PRP31_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 5.502e-21 Identity = 48/156 (30.77%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 24 SMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD 491 + GQ LS +L ++ ++L+ + ++YEY+ ++M+ IAPNL+ +IG A+++ AG LTNL+K P+ + +LGA++ + P G I+HS + + + AR +A KC++A+R+D F E G +L++++E + D Sbjct: 174 TQGQQLSDEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFD 329
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: PRP31_XENLA (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 7.186e-21 Identity = 47/156 (30.13%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 24 SMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD 491 + GQ L+ +L ++ ++L++ + ++YEY+ ++M+ IAPNL+ ++G A+++ AG LTNL+K P+ + +LGA++ + P G I+HS + + + AR ++ KC++ASR+D F E G L+E++E + D Sbjct: 173 TQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLTGFSSTSVLPHTGYIYHSEIVQSLPSDLHRKAARLVSAKCTLASRVDSFHENPEGKIGYDLKEEIERKFD 328
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: PRP31_XENTR (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.601e-20 Identity = 46/156 (29.49%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 24 SMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD 491 + GQ L+ +L ++ ++L++ + ++YEY+ ++M+ IAPNL+ ++G A+++ AG LTNL+K P+ + +LGA++ + P G I+HS + + AR ++ KC++A+R+D F E + G L+E++E + D Sbjct: 173 TQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLHRKAARLVSAKCTLAARVDSFHESSEGKVGYDLKEEIERKFD 328
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: PRP31_DANRE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 5.150e-19 Identity = 46/156 (29.49%), Postives = 86/156 (55.13%), Query Frame = 3 Query: 24 SMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD 491 + G L +L ++ ++L++ + ++YEY+ ++M+ IAPNL+ ++G A+++ AG LTNL+K P+ L +LGA++ + P G I+H + + + AR ++ KC++ASR+D F E G L+E++E + D Sbjct: 185 TQGTMLGDDELQRLEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGVAGGLTNLSKMPACNLMLLGAQRRTLSGFSSTSLLPHTGYIYHCDVVQTLPPDLRRKAARLVSAKCTLASRVDSFHESADGKVGYDLKEEIERKFD 340 The following BLAST results are available for this feature:
BLAST of CF504816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >CF504816 ID=CF504816; Name=CF504816; organism=Citrus sinensis; type=EST; length=492bpback to top |