CF504816

Overview
NameCF504816
Unique NameCF504816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_YEAS7 (Nucleolar protein 58 OS=Saccharomyces cerevisiae (strain YJM789) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.819e-40
Identity = 81/161 (50.31%), Postives = 120/161 (74.53%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAE--KNTTIFGEKLREQVEERL 488
            A + SMG +++  DL N+   A+++++ + YR++L  YL  +M  IAPNL  L+GE+VGARLI+H+GSL +LAK P+ST+QILGAEKALFRALKT+ +TPKYGL++H+S +G+A+ +NKG++AR LA K +++ R D  AE   ++   G + R +VE RL
Sbjct:  238 AAEVSMGTEITQTDLDNINALAEQIVEFAAYREQLSNYLSARMKAIAPNLTQLVGELVGARLIAHSGSLISLAKSPASTIQILGAEKALFRALKTKHDTPKYGLLYHASLVGQATGKNKGKIARVLAAKAAVSLRYDALAEDRDDSGDIGLESRAKVENRL 398          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_CRYNE (Nucleolar protein 58 OS=Cryptococcus neoformans GN=NOP58 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 9.027e-40
Identity = 79/144 (54.86%), Postives = 111/144 (77.08%), Query Frame = 3
Query:   12 AGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNT 443
            A + SMG ++S  D+ ++     +V+ +SEYR +L EYL  +M  IAPNL +L+GE+VGARLISHAGSL NLAK P+ST+QILGAEKALFRALKT+ +TPKYGLI+H+S IG+A  + KG+MAR +A K +++ R+D  ++ ++
Sbjct:  248 AAELSMGTEISDSDMTHIHSLCDQVISISEYRTQLSEYLRNRMQAIAPNLTALVGELVGARLISHAGSLMNLAKHPASTVQILGAEKALFRALKTKHDTPKYGLIYHASLIGQAPQKLKGKMARMVATKAALSIRVDALSDADS 391          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP58_DICDI (Nucleolar protein 58 OS=Dictyostelium discoideum GN=nop58 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.480e-39
Identity = 80/161 (49.69%), Postives = 112/161 (69.57%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEER 485
            + EA + SMG ++S  DL ++     + + +  Y  +L EYL ++M  IAPNL  L+GE+VGARLI  AGSL NLAK P+ST+QILGAEKALFRALKT+ NTPKYGLI+++  +G AS +NKG+M+R LA K ++++R D   E + T +G   +  V+ R
Sbjct:  236 VKEAAQISMGTEISPEDLDHIFALCDQFLSIQAYHTELTEYLKSRMEAIAPNLTILVGEIVGARLICRAGSLMNLAKYPASTIQILGAEKALFRALKTKHNTPKYGLIYNAKIVGEASLKNKGKMSRVLAAKAALSARFDALCEVSDTSYGIAYKGAVDRR 396          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: NOP5C_ARATH (Putative nucleolar protein 5-3 OS=Arabidopsis thaliana GN=NOP5-3 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 1.349e-35
Identity = 77/160 (48.12%), Postives = 109/160 (68.12%), Query Frame = 3
Query:    9 EAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERL 488
            EA   S   ++S +DL+++Q    +V+ ++E +  L + L  KMN IAPNL +L+GE+VGARLISH GSL NL+K P ST+QILGAEK L++ALKT+  TPKYGLI+H+  + +A+  NKG++AR LA K ++A R D F        G + R ++E RL
Sbjct:  206 EASMVSTRTEVSDLDLMHIQELCDQVLSIAEDKTLLCDDLKNKMNKIAPNLTALVGELVGARLISHCGSLWNLSKLPWSTIQILGAEKTLYKALKTKQATPKYGLIYHAPLVRQAAPENKGKIARSLAAKSALAIRCDAFGNGQDNTMGVESRLKLEARL 365          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: Y694_METJA (Uncharacterized NOP5 family protein MJ0694 OS=Methanocaldococcus jannaschii GN=MJ0694 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.069e-28
Identity = 72/160 (45.00%), Postives = 97/160 (60.62%), Query Frame = 3
Query:    3 IVEAGKASMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEE 482
            I EA K SMG +L   DL  +  FA+ +  L E RK+LY YL   MN+ APN+  L G  +GARLI  AG L  LAK P+ST+Q+LGAEKALF  L+     PK+G+I++   I  +    +G++AR LA K +IA+R D   +       EKL ++VEE
Sbjct:  198 IAEAAKNSMGGELEDYDLDVIVKFAEEINHLYEKRKELYNYLEKLMNEEAPNITKLAGVSLGARLIGLAGGLEKLAKMPASTIQVLGAEKALFAHLRMGVEPPKHGIIYNHPLIQGSPHWQRGKIARALACKLAIAARADYVGDYIADELLEKLNKRVEE 357          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: PRP31_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 4.213e-21
Identity = 48/156 (30.77%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   24 SMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD 491
            + GQ LS  +L  ++      ++L+  + ++YEY+ ++M+ IAPNL+ +IG    A+++  AG LTNL+K P+  + +LGA++       +    P  G I+HS  +       + + AR +A KC++A+R+D F E      G +L++++E + D
Sbjct:  174 TQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFD 329          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: PRP31_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 5.502e-21
Identity = 48/156 (30.77%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   24 SMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD 491
            + GQ LS  +L  ++      ++L+  + ++YEY+ ++M+ IAPNL+ +IG    A+++  AG LTNL+K P+  + +LGA++       +    P  G I+HS  +       + + AR +A KC++A+R+D F E      G +L++++E + D
Sbjct:  174 TQGQQLSDEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFD 329          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: PRP31_XENLA (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.186e-21
Identity = 47/156 (30.13%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   24 SMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD 491
            + GQ L+  +L  ++      ++L++ + ++YEY+ ++M+ IAPNL+ ++G    A+++  AG LTNL+K P+  + +LGA++       +    P  G I+HS  +    +    + AR ++ KC++ASR+D F E      G  L+E++E + D
Sbjct:  173 TQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLTGFSSTSVLPHTGYIYHSEIVQSLPSDLHRKAARLVSAKCTLASRVDSFHENPEGKIGYDLKEEIERKFD 328          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: PRP31_XENTR (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.601e-20
Identity = 46/156 (29.49%), Postives = 89/156 (57.05%), Query Frame = 3
Query:   24 SMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD 491
            + GQ L+  +L  ++      ++L++ + ++YEY+ ++M+ IAPNL+ ++G    A+++  AG LTNL+K P+  + +LGA++       +    P  G I+HS  +         + AR ++ KC++A+R+D F E +    G  L+E++E + D
Sbjct:  173 TQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLHRKAARLVSAKCTLAARVDSFHESSEGKVGYDLKEEIERKFD 328          
BLAST of CF504816 vs. ExPASy Swiss-Prot
Match: PRP31_DANRE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.150e-19
Identity = 46/156 (29.49%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   24 SMGQDLSAVDLVNVQMFAQRVMDLSEYRKKLYEYLVTKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAEKNTTIFGEKLREQVEERLD 491
            + G  L   +L  ++      ++L++ + ++YEY+ ++M+ IAPNL+ ++G    A+++  AG LTNL+K P+  L +LGA++       +    P  G I+H   +       + + AR ++ KC++ASR+D F E      G  L+E++E + D
Sbjct:  185 TQGTMLGDDELQRLEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGVAGGLTNLSKMPACNLMLLGAQRRTLSGFSSTSLLPHTGYIYHCDVVQTLPPDLRRKAARLVSAKCTLASRVDSFHESADGKVGYDLKEEIERKFD 340          
The following BLAST results are available for this feature:
BLAST of CF504816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
NOP58_YEAS71.819e-4050.31Nucleolar protein 58 OS=Saccharomyces cerevisiae (... [more]
NOP58_CRYNE9.027e-4054.86Nucleolar protein 58 OS=Cryptococcus neoformans GN... [more]
NOP58_DICDI4.480e-3949.69Nucleolar protein 58 OS=Dictyostelium discoideum G... [more]
NOP5C_ARATH1.349e-3548.13Putative nucleolar protein 5-3 OS=Arabidopsis thal... [more]
Y694_METJA6.069e-2845.00Uncharacterized NOP5 family protein MJ0694 OS=Meth... [more]
PRP31_HUMAN4.213e-2130.77U4/U6 small nuclear ribonucleoprotein Prp31 OS=Hom... [more]
PRP31_MOUSE5.502e-2130.77U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus... [more]
PRP31_XENLA7.186e-2130.13U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
PRP31_XENTR1.601e-2029.49U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
PRP31_DANRE5.150e-1929.49U4/U6 small nuclear ribonucleoprotein Prp31 OS=Dan... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-307 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-22_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504816 ID=CF504816; Name=CF504816; organism=Citrus sinensis; type=EST; length=492bp
AGATTGTGGAGGCTGGCAAAGCATCAATGGGACAGGATTTGTCTGCAGTT
GACTTAGTTAATGTCCAGATGTTTGCTCAAAGGGTGATGGACCTCTCTGA
GTACAGGAAGAAACTTTATGAGTATCTGGTTACTAAAATGAATGATATTG
CACCCAATTTGGCCTCCTTGATTGGTGAAGTTGTTGGGGCTCGGTTGATT
TCTCATGCTGGTAGTCTCACAAATCTGGCTAAGTGTCCATCTTCTACCCT
TCAGATCCTTGGTGCTGAGAAAGCACTCTTCAGAGCATTAAAAACTCGAG
GAAACACACCAAAGTATGGTCTGATTTTCCACTCATCTTTCATTGGTCGA
GCTTCTGCCCGGAACAAGGGCCGTATGGCTCGATACCTTGCAAACAAGTG
TTCTATTGCATCTCGCATTGACTGTTTTGCAGAAAAAAACACTACCATTT
TTGGGGAGAAACTTCGTGAACAAGTTGAAGAGCGGCTGGACT
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