CF504958

Overview
NameCF504958
Unique NameCF504958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length373
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.928e-23
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  143 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGG 370
            GT     G I++RE+FE +L +RN+  CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HET GG
Sbjct:   21 GTLAQNAGSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG 96          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.928e-23
Identity = 48/79 (60.76%), Postives = 60/79 (75.95%), Query Frame = 2
Query:  134 TGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGG 370
            +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKRE+AAF AQT HETTGG
Sbjct:   63 SGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGG 141          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.436e-23
Identity = 43/76 (56.58%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  146 TDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            T GG++G+++   +F+ +L YRND RC   GFYTYDAFI AA++F GFG +G++  +K+E+AAF AQT HETTGGW
Sbjct:   75 TGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGW 150          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.436e-23
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 2
Query:  158 ELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF  QT HETTGGW
Sbjct:   75 DLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGW 146          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.436e-23
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 2
Query:  161 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGG 370
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FPGFG SG++T R++EIAAFF QT HETTGG
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGG 96          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.405e-23
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 2
Query:  158 ELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AA+A+P FGN+G+   RKREIAAF  QT HETTGGW
Sbjct:   74 DLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGW 145          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.405e-23
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 2
Query:  161 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            +G I+ R++FE LL +RND  CPARGFYTY+AF+ AA AFP FG +GN   RKRE+AAF  QT HETTGGW
Sbjct:   89 VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGW 159          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.098e-22
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  152 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKRE+AAF AQT HETTGGW
Sbjct:   77 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGW 150          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.873e-22
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  152 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            GG+LG  IS  MF+ +L +RN+  C  + FY+Y+AFI AA++FPGFG SG+   RKREIAAFFAQT HETTGGW
Sbjct:   76 GGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGW 149          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.873e-22
Identity = 44/70 (62.86%), Postives = 57/70 (81.43%), Query Frame = 2
Query:  161 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGG 370
            +G I++ ++F ++L  RND RCPA GFYTYDAFI AA +FPGFG +G++T R++EIAAFF QT HETTGG
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGG 96          
The following BLAST results are available for this feature:
BLAST of CF504958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHIA_SOLCI4.928e-2361.84Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI1_THECC4.928e-2360.76Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIX_PEA6.436e-2356.58Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIT_PHAVU6.436e-2363.89Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIP_TOBAC6.436e-2364.29Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI5_PHAVU8.405e-2363.89Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_ORYSJ8.405e-2364.79Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SECCE1.098e-2262.16Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIT_SOLTU1.873e-2262.16Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIQ_TOBAC1.873e-2262.86Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-451 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-23_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504958 ID=CF504958; Name=CF504958; organism=Citrus sinensis; type=EST; length=373bp
ATTGATATCATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACT
AATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATT
GTGGAAGCGGCGTTGTGTGCCGGTGAACGTGATACTGGCCACGGGACGGA
TGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGC
TTCCGTATAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTAT
GATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGG
AAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTG
GCCATGAAACTACTGGGGGATGG
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