CF504958

Overview
NameCF504958
Unique NameCF504958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length373
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.873e-22
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  143 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            GT  G +  I+SR  F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   +KRE+AAF AQT HETTGGW
Sbjct:   19 GTARGSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGW 95          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.873e-22
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = 2
Query:  116 CAGERDTGHGTDGGE-LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            C G   T     GG  +  I+SR +F+ +L +RNDA CPA+ FYTYDAF+ AA AFP F  +G+   RKRE+AAF AQT HETTGGW
Sbjct:   63 CGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGW 149          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.194e-22
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 2
Query:  137 GHGTDGGELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            G G  GG++G +IS  MF+ +L +RND  C  +  FY+Y+AFI AA++F GFG +G+ T RKREIAAFFAQT HETTGGW
Sbjct:   70 GPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGW 149          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.172e-22
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 2
Query:  167 KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AA++FP FG +G+  +RKRE+AAF  QT HETTGGW
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGW 72          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.448e-22
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  143 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            GT  G +  IIS   F+ +L +RND  C A+GFYTYDAF+ AA AFPGFG +G+   RKR++AAF AQT HETTGGW
Sbjct:   19 GTAHGSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGW 95          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.448e-22
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 2
Query:  116 CAGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGG 370
            C+G   +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKREIAAF AQT HETTGG
Sbjct:   40 CSG---SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGG 121          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.448e-22
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 2
Query:  116 CAGERDTGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGG 370
            C+G   +G     G L  +ISRE F  +L +RND  CPARGFYTYDAFI AA++FP F  +G++  RKREIAAF AQT HETTGG
Sbjct:   62 CSG---SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGG 143          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.293e-22
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  143 GTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            G   G++  IIS  MF+ +L +RND  C  + FYTY+AFI AA++F GFG +G+ T RKRE+AAFFAQT HETTGGW
Sbjct:   79 GPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGW 155          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.293e-22
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 2
Query:  143 GTDGGELGKIISREMFEDLLPYRNDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            G   G+LG +IS  MF+ +L +RND  C  +G FY+Y+AFI AA +FPGFG +G+ T RKREIAAFFAQT HETTGGW
Sbjct:   60 GGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGW 137          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 9.293e-22
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 2
Query:  152 GGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            GG +  I+SR +F+ +L +RND  C A+GFYTYDAF+ AA AF GFG +G    RKRE+AAF AQT HETTGGW
Sbjct:   74 GGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGW 147          
The following BLAST results are available for this feature:
BLAST of CF504958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI2_HORVU1.873e-2259.7426 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_ORYSJ1.873e-2255.17Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_SOLTU3.194e-2258.75Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_CARPA4.172e-2263.77Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIC_SECCE5.448e-2259.74Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI2_GOSHI5.448e-2258.82Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI5.448e-2258.82Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI3_TOBAC9.293e-2258.44Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI2_SOLTU9.293e-2261.54Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_HORVU9.293e-2260.8126 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-451 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-23_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504958 ID=CF504958; Name=CF504958; organism=Citrus sinensis; type=EST; length=373bp
ATTGATATCATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACT
AATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATT
GTGGAAGCGGCGTTGTGTGCCGGTGAACGTGATACTGGCCACGGGACGGA
TGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGC
TTCCGTATAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTAT
GATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGG
AAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTG
GCCATGAAACTACTGGGGGATGG
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