CF504958

Overview
NameCF504958
Unique NameCF504958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length373
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.233e-18
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  152 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGG 370
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT H T+GG
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGG 166          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.233e-18
Identity = 41/75 (54.67%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  152 GGELG--KIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGG 370
            GG  G   +++ + FE +LP+R+DA CPARGFY Y AF+ AA AFP F  +G+   RKRE+AAF AQT H T+GG
Sbjct:   92 GGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGG 166          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.141e-18
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 2
Query:   98 IVEAALCAGERDTGHGTDGG------ELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            +V AA  A  R  G G  GG       +  I+S +++  L  +++DA CPARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW
Sbjct:   22 VVVAASGAEARWYGGGGGGGYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGW 119          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.535e-16
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 2
Query:  176 SREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTG 367
            +  MFE +LP RN+  CP +GFYTYDA+  A + +PGFG +G++  RKRE+AAFFAQT  ET+G
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSG 131          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.896e-15
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  161 LGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGW 373
            +  +IS  +FE +L +R        GFYTYDAFI AA++FP F  +G+  +RKRE+AAF AQT HETTGGW
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGW 63          
BLAST of CF504958 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.380e-11
Identity = 29/78 (37.18%), Postives = 48/78 (61.54%), Query Frame = 2
Query:  134 TGHGTDGGELGKIISREMFEDLLPYRNDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTG 367
            +G+ T       +++  +F+ +  +R D  CP++GFY+Y +F+ AA++FP FG  G+   RKRE+AAF A     T+G
Sbjct:  121 SGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSG 196          
The following BLAST results are available for this feature:
BLAST of CF504958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI7_ORYSJ6.233e-1854.67Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI6.233e-1854.67Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI10_ORYSJ8.141e-1846.94Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR1.535e-1656.25Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIT_AVESA2.896e-1553.52Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI7.380e-1137.18Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-451 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-23_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504958 ID=CF504958; Name=CF504958; organism=Citrus sinensis; type=EST; length=373bp
ATTGATATCATAACTCTTGCTTTCAAAATGAGGCTCATTGGGTCCTTACT
AATTTTCTCTCTAGTTTTATCTTTTGTACTAGGAGGTTCAGCACAGAATT
GTGGAAGCGGCGTTGTGTGCCGGTGAACGTGATACTGGCCACGGGACGGA
TGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACTTGC
TTCCGTATAGAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACACTTAT
GATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGG
AAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAACTG
GCCATGAAACTACTGGGGGATGG
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