CF504989

Overview
NameCF504989
Unique NameCF504989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF504989 vs. ExPASy Swiss-Prot
Match: THS2_VITVI (Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT00004047001 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 5.729e-61
Identity = 109/140 (77.86%), Postives = 128/140 (91.43%), Query Frame = 1
Query:   31 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGA 450
            MA+V+EIRNAQRA GPAT+LAIGTATP H V Q+DY DYYFR+TKSEHMT LK+KF R+CDKSMIKKRY++LTEE+L+E+PN+ AYMAPSL+ RQ+I+  EVPKLGKEAA KA+KEWGQPKSKITHL+FCTTSGV+MPGA
Sbjct:    1 MASVEEIRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEHMTALKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGA 140          
BLAST of CF504989 vs. ExPASy Swiss-Prot
Match: CHS1_MEDSA (Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 5.729e-61
Identity = 110/140 (78.57%), Postives = 124/140 (88.57%), Query Frame = 1
Query:   31 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGA 450
            M +V EIR AQRA+GPAT++AIGTA PA+ V Q+ YPD+YF+IT SEH  ELKEKF+RMCDKSMIK+RYMYLTEEILK+NP +C YMAPSL ARQD+ VV VP+LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGA
Sbjct:    1 MVSVAEIRQAQRAEGPATIMAIGTANPANCVEQSTYPDFYFKITNSEHKVELKEKFQRMCDKSMIKRRYMYLTEEILKDNPRVCEYMAPSLAARQDMAVVVVPRLGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGA 140          
BLAST of CF504989 vs. ExPASy Swiss-Prot
Match: THS7_VITVI (Stilbene synthase 6 OS=Vitis vinifera GN=STS PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 3.714e-60
Identity = 106/140 (75.71%), Postives = 128/140 (91.43%), Query Frame = 1
Query:   31 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGA 450
            MA+V+E RNAQRA GPAT+LAIGTATP H V Q+DY DYYFR+TKSEHMTELK+KF R+CDKSMIKKRY++LTEE+L+E+PN+ AYMAPSL+ RQ+I+  EVP+LG++AA KA+KEWGQPKSKITHL+FCTTSGV+MPGA
Sbjct:    1 MASVEEFRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEHMTELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPRLGRDAALKALKEWGQPKSKITHLVFCTTSGVEMPGA 140          
BLAST of CF504989 vs. ExPASy Swiss-Prot
Match: THS4_VITVI (Stilbene synthase 4 OS=Vitis vinifera GN=GSVIVT00005194001 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 3.714e-60
Identity = 108/140 (77.14%), Postives = 129/140 (92.14%), Query Frame = 1
Query:   31 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGA 450
            MA+V+EIRNAQRA GPATVLAIGTATP + + Q+D+ DYYFR+TKSEHMTELK+KF R+CDKSMIKKRY++LTEE+L+E+PN+ AYMAPSL+ RQ+I+  EVPKLGKEAA KA+KEWGQPKSKITHL+FCTTSGV+MPGA
Sbjct:    1 MASVEEIRNAQRAKGPATVLAIGTATPDNCLYQSDFADYYFRVTKSEHMTELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGA 140          
BLAST of CF504989 vs. ExPASy Swiss-Prot
Match: THS1_VITVI (Stilbene synthase 1 OS=Vitis vinifera GN=VINST1 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 3.714e-60
Identity = 106/140 (75.71%), Postives = 128/140 (91.43%), Query Frame = 1
Query:   31 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGA 450
            MA+V+E RNAQRA GPAT+LAIGTATP H V Q+DY DYYFR+TKSEHMTELK+KF R+CDKSMIKKRY++LTEE+L+E+PN+ AYMAPSL+ RQ+I+  EVP+LG++AA KA+KEWGQPKSKITHL+FCTTSGV+MPGA
Sbjct:    1 MASVEEFRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEHMTELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPRLGRDAALKALKEWGQPKSKITHLVFCTTSGVEMPGA 140          
BLAST of CF504989 vs. ExPASy Swiss-Prot
Match: VPS_HUMLU (Phloroisovalerophenone synthase OS=Humulus lupulus GN=VPS PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 6.334e-60
Identity = 106/142 (74.65%), Postives = 127/142 (89.44%), Query Frame = 1
Query:   25 LAMATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGA 450
            +A  TV++IR AQRA+GPAT+LAIGTA PA+  NQAD+PDYYFR+TKSEHMT+LK+KF+RMC+KS IKKRY++LTEE LK+NP++C Y APSL+ RQD++VVEVPKLGKEAA  AIKEWGQPKSKITHLIFCT S +DMPGA
Sbjct:    1 MASVTVEQIRKAQRAEGPATILAIGTAVPANCFNQADFPDYYFRVTKSEHMTDLKKKFQRMCEKSTIKKRYLHLTEEHLKQNPHLCEYNAPSLNTRQDMLVVEVPKLGKEAAINAIKEWGQPKSKITHLIFCTGSSIDMPGA 142          
BLAST of CF504989 vs. ExPASy Swiss-Prot
Match: THS3_VITVI (Stilbene synthase 3 (Fragment) OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 7.003e-59
Identity = 106/137 (77.37%), Postives = 125/137 (91.24%), Query Frame = 1
Query:   40 VQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGA 450
            V+EIRNAQRA GPAT+LAIGTATP H V Q+DY DYYFR+TKSE M+ELK+KF R+CDKSMIKKRY++LTEE+L+E+PN+ AYMAPSL+ RQ+I+  EVPKLGKEAA KA+KEWGQPKSKITHL+FCTTSGV+MPGA
Sbjct:    1 VEEIRNAQRAKGPATILAIGTATPDHCVYQSDYADYYFRVTKSEPMSELKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIRQEIITAEVPKLGKEAALKALKEWGQPKSKITHLVFCTTSGVEMPGA 137          
BLAST of CF504989 vs. ExPASy Swiss-Prot
Match: CHS1_DAUCA (Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 2.038e-58
Identity = 109/140 (77.86%), Postives = 121/140 (86.43%), Query Frame = 1
Query:   31 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGA 450
            M TV E R AQRA+GPATVLAIGTATP + V+Q+ Y DYYFRIT SE   ELKEKF+RMC+KSMI  RYM+LTE++LK+NP+ C YMA SLDARQDIVV EVPKLGKEAA +AIKEWGQPKSKITHLIFCTTSGVDMPGA
Sbjct:    1 MVTVNEFRKAQRAEGPATVLAIGTATPPNCVDQSAYADYYFRITNSEDKPELKEKFRRMCEKSMINTRYMHLTEDLLKQNPSFCEYMASSLDARQDIVVNEVPKLGKEAALRAIKEWGQPKSKITHLIFCTTSGVDMPGA 140          
BLAST of CF504989 vs. ExPASy Swiss-Prot
Match: CHSY_ONOVI (Chalcone synthase OS=Onobrychis viciifolia GN=CHS PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 5.929e-58
Identity = 107/140 (76.43%), Postives = 118/140 (84.29%), Query Frame = 1
Query:   31 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGA 450
            M  V E R  QRA+GP T+ AI TA P + V Q+ YPD+YF+IT SEH  ELKEKF+RM DKSMIK+RYMYLTEEILKENPN+C YMAPSLDARQD+ VVEVP+LGKEAA KAIKEWGQPKSKITHLI CTTSGVDMPGA
Sbjct:    1 MVDVAESRRTQRAEGPRTIFAIATANPPNCVEQSTYPDFYFKITNSEHKVELKEKFQRMDDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQDMFVVEVPRLGKEAAVKAIKEWGQPKSKITHLIVCTTSGVDMPGA 140          
BLAST of CF504989 vs. ExPASy Swiss-Prot
Match: CHS9_DAUCA (Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 5.929e-58
Identity = 108/140 (77.14%), Postives = 121/140 (86.43%), Query Frame = 1
Query:   31 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGA 450
            M TV E R AQRA+GPATVLAIGTATP + V+Q+ Y DYYFRIT SE   ELKEKF+RMC+KSMI  RYM+LTE++LK+NP+ C YMA SLDARQDIVV EVPKLGKEAA +AIKEWG+PKSKITHLIFCTTSGVDMPGA
Sbjct:    1 MVTVNEFRKAQRAEGPATVLAIGTATPPNCVDQSAYADYYFRITNSEDKPELKEKFRRMCEKSMINTRYMHLTEDLLKQNPSFCEYMASSLDARQDIVVNEVPKLGKEAALRAIKEWGRPKSKITHLIFCTTSGVDMPGA 140          
The following BLAST results are available for this feature:
BLAST of CF504989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
THS2_VITVI5.729e-6177.86Stilbene synthase 2 OS=Vitis vinifera GN=GSVIVT000... [more]
CHS1_MEDSA5.729e-6178.57Chalcone synthase 1 OS=Medicago sativa GN=CHS1 PE=... [more]
THS7_VITVI3.714e-6075.71Stilbene synthase 6 OS=Vitis vinifera GN=STS PE=2 ... [more]
THS4_VITVI3.714e-6077.14Stilbene synthase 4 OS=Vitis vinifera GN=GSVIVT000... [more]
THS1_VITVI3.714e-6075.71Stilbene synthase 1 OS=Vitis vinifera GN=VINST1 PE... [more]
VPS_HUMLU6.334e-6074.65Phloroisovalerophenone synthase OS=Humulus lupulus... [more]
THS3_VITVI7.003e-5977.37Stilbene synthase 3 (Fragment) OS=Vitis vinifera P... [more]
CHS1_DAUCA2.038e-5877.86Chalcone synthase 1 OS=Daucus carota GN=CHS1 PE=2 ... [more]
CHSY_ONOVI5.929e-5876.43Chalcone synthase OS=Onobrychis viciifolia GN=CHS ... [more]
CHS9_DAUCA5.929e-5877.14Chalcone synthase 9 OS=Daucus carota GN=CHS9 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-482 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504989 ID=CF504989; Name=CF504989; organism=Citrus sinensis; type=EST; length=450bp
AAAACATATTCATTACGGGTTTAACTTGCAATGGCAACCGTTCAAGAGAT
CAGAAACGCTCAGCGTGCCGACGGCCCGGCCACCGTCCTCGCCATCGGTA
CGGCCACGCCTGCCCACAGTGTCAACCAGGCTGATTATCCCGACTATTAC
TTCAGGATCACAAAGAGCGAGCATATGACGGAGCTTAAAGAGAAGTTCAA
GCGCATGTGTGACAAGTCAATGATTAAGAAGCGTTACATGTACTTAACGG
AAGAGATTTTGAAGGAAAATCCCAACATGTGCGCTTACATGGCTCCATCA
CTCGACGCACGTCAAGACATTGTGGTGGTCGAAGTGCCGAAGCTCGGGAA
AGAAGCTGCTACAAAGGCCATCAAAGAATGGGGCCAGCCCAAGTCTAAGA
TCACCCACCTCATCTTCTGCACCACCTCCGGCGTCGACATGCCCGGCGCC
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