CF504989

Overview
NameCF504989
Unique NameCF504989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF504989 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.741e-25
Identity = 52/63 (82.54%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:  259 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPG 447
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPG 63
[Close]
BLAST of CF504989 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.862e-14
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:  343 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGA 450
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGA
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGA 36
The following BLAST results are available for this feature:
BLAST of CF504989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
THS2_ARAHY1.741e-2582.54Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA6.862e-1497.22Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-482 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504989 ID=CF504989; Name=CF504989; organism=Citrus sinensis; type=EST; length=450bp
AAAACATATTCATTACGGGTTTAACTTGCAATGGCAACCGTTCAAGAGAT
CAGAAACGCTCAGCGTGCCGACGGCCCGGCCACCGTCCTCGCCATCGGTA
CGGCCACGCCTGCCCACAGTGTCAACCAGGCTGATTATCCCGACTATTAC
TTCAGGATCACAAAGAGCGAGCATATGACGGAGCTTAAAGAGAAGTTCAA
GCGCATGTGTGACAAGTCAATGATTAAGAAGCGTTACATGTACTTAACGG
AAGAGATTTTGAAGGAAAATCCCAACATGTGCGCTTACATGGCTCCATCA
CTCGACGCACGTCAAGACATTGTGGTGGTCGAAGTGCCGAAGCTCGGGAA
AGAAGCTGCTACAAAGGCCATCAAAGAATGGGGCCAGCCCAAGTCTAAGA
TCACCCACCTCATCTTCTGCACCACCTCCGGCGTCGACATGCCCGGCGCC
back to top