CF505028

Overview
NameCF505028
Unique NameCF505028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 2.824e-31
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            +HL+   GDIL+F+ GQE+I+     + E ++ L +N P L +LP+YS LPS++Q++IF  AP G RK +VATNIAE SLT+DGI +VID G+ K  V+NP+ G+D+L I PISQA+A QR+
Sbjct:  734 VHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEEL-ENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRS 854          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.824e-31
Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            +HL+   GDIL+F+ GQE+I+     + E ++ L +N P L +LP+YS LPS++Q++IF  AP G RK +VATNIAE SLT+DGI +VID G+ K  V+NP+ G+D+L I PISQA+A QR+
Sbjct:  734 VHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEEL-ENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRS 854          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP2_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 OS=Saccharomyces cerevisiae GN=PRP2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.326e-30
Identity = 71/133 (53.38%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    1 IHLTEP-EGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAWACRAYGAWK 396
            IH T+   GDIL+FLTGQEEI+     L E M  LG    ++II P+Y+ LP E Q +IF P P   RKVV+ATNIAE SLTIDGI YVIDPGF K+N Y P  G+  L+  P S+AS  QRA      G  K
Sbjct:  428 IHTTQSLPGDILVFLTGQEEIERTKTKLEEIMSKLGSRTKQMIITPIYANLPQEQQLKIFQPTPENCRKVVLATNIAETSLTIDGIRYVIDPGFVKENSYVPSTGMTQLLTVPCSRASVDQRAGRAGRVGPGK 560          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX35_CAEEL (Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis elegans GN=Y67D2.6 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.130e-29
Identity = 62/122 (50.82%), Postives = 82/122 (67.21%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IH  E  GDIL+FLTGQ+E++  C+ L E + G  KN   L ++P Y ALP+  Q + FD  P G RKVVVATNIAEAS+TI GI YVID G+ K    +   G+++L+   +S+ASA+QRA
Sbjct:  290 IHKHENPGDILVFLTGQDEVEDVCEKLRE-LAGNLKNCDRLWVVPCYGALPAREQMKAFDSTPHGTRKVVVATNIAEASITIPGICYVIDTGYVKLRAQHAANGVETLMRVTVSKASAEQRA 410          

HSP 2 Score: 32.7278 bits (73), Expect = 1.130e-29
Identity = 15/28 (53.57%), Postives = 16/28 (57.14%), Query Frame = 2
Query:  344 KHQPSSELGRAGRTGPGKWYRLYTESAY 427
            K       GRAGR  PGK YRLY ES +
Sbjct:  403 KASAEQRAGRAGRIRPGKCYRLYPESEF 430          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP43_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae GN=PRP43 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.187e-29
Identity = 72/134 (53.73%), Postives = 94/134 (70.15%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSL------YERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAP------PGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IH TE  GDILLFLTG++EI+ A + +        R +G G     L + P+Y +LP   Q RIF+PAP      PG RKVV++TNIAE SLTIDGI YV+DPGF+KQ VYNP+  ++SL+++PIS+ASA+QRA
Sbjct:  297 IHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGP----LSVYPLYGSLPPHQQQRIFEPAPESHNGRPG-RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRA 425          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.452e-29
Identity = 66/129 (51.16%), Postives = 90/129 (69.77%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKN--VPELIILPVYSALPSEMQSRIFDPAPPGK-----RKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IH+ E  GDIL+FLTG+EEI+ AC+ +      L +      L + P+Y +LP   Q RIF+P P        RKVV++TNIAE SLTIDGI YV+DPGF+KQ +YNP+  ++SL+++PIS+ASA+QRA
Sbjct:  279 IHVEEGPGDILVFLTGEEEIEDACRKITLEADDLVREGAAGPLKVYPLYGSLPPNQQQRIFEPTPEDTKSGYGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRA 407          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.312e-28
Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IH  E  GDIL+FLTG+EEI+  C  +    +  G  +P +  LP+YS+LP   QS+IFD     +RK +V+TNIAE SLTIDGI +V+DPGF+KQ  YNP+  ++SL++ PIS+ASA QRA
Sbjct:  280 IHTNEGTGDILVFLTGEEEIEDTCAKIQRETRERG--LPPMKTLPLYSSLPIYQQSKIFDTCK--ERKCIVSTNIAETSLTIDGIVFVVDPGFSKQKTYNPRSRVESLLVAPISKASANQRA 397          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP16_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae GN=PRP16 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 4.985e-28
Identity = 69/133 (51.88%), Postives = 92/133 (69.17%), Query Frame = 1
Query:    1 IHLTEP--EGDILLFLTGQEEIDFACQSLYERM-----KGLG----KNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IHL      GDIL+F+TGQE+I+    +L E+      K  G    + + ++ ILP+YSALP+++Q +IF      KRK+++ATNIAE SLTI GI YVID G++K  VYNPK GLDSLVITPIS+A+A QR+
Sbjct:  555 IHLANDCSSGDILIFMTGQEDIETTFDTLQEKFLQVYSKKFGTANFEEINDIEILPIYSALPADLQFKIFQDLHGTKRKIIIATNIAETSLTIKGIRYVIDCGYSKLKVYNPKIGLDSLVITPISKANADQRS 687          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.894e-27
Identity = 62/124 (50.00%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPE--LIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IH TE +GDIL FLTGQEE++     L E+ + L +   +  L +LP+Y+ LPS  Q ++F+      RKV+VATN+AE S+TI GI YVID GF K   YNP+  ++ LV+ P+SQASA QRA
Sbjct:  268 IHQTEGDGDILAFLTGQEEVETVVSMLIEQARALARTGMKRHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRA 391          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX35_HUMAN (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 2.474e-27
Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPE--LIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IH TE +GD+L FLTGQEE++     L E+ + L +   +  L +LP+Y+ LPS  Q ++F+      RKV+VATN+AE S+TI GI YVID GF K   YNP+  ++ LV+ P+SQASA QRA
Sbjct:  268 IHQTEGDGDVLAFLTGQEEVETVVSMLIEQARALARTGMKRHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRA 391          
The following BLAST results are available for this feature:
BLAST of CF505028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
PRP16_HUMAN2.824e-3152.46Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_BOVIN2.824e-3152.46Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP2_YEAST5.326e-3053.38Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX35_CAEEL1.130e-2950.82Probable ATP-dependent RNA helicase DHX35 homolog ... [more]
PRP43_YEAST1.187e-2953.73Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX15_SCHPO3.452e-2951.16Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_DICDI1.312e-2852.46Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_YEAST4.985e-2851.88Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX35_PONAB1.894e-2750.00Probable ATP-dependent RNA helicase DHX35 OS=Pongo... [more]
DHX35_HUMAN2.474e-2749.19Probable ATP-dependent RNA helicase DHX35 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505028 ID=CF505028; Name=CF505028; organism=Citrus sinensis; type=EST; length=503bp
ATCCATTTGACAGAGCCTGAAGGTGATATTCTTCTCTTCTTGACTGGGCA
GGAGGAGATTGATTTTGCATGCCAGTCTCTTTATGAGAGGATGAAAGGTC
TAGGTAAAAATGTTCCTGAGCTAATCATATTACCGGTTTACAGTGCCCTC
CCTAGTGAAATGCAATCTAGAATATTTGACCCTGCCCCGCCAGGAAAGAG
AAAAGTGGTTGTGGCCACTAATATTGCTGAAGCTTCTTTGACAATTGATG
GAATATTCTATGTTATCGATCCTGGGTTTGCGAAACAGAATGTTTATAAT
CCAAAGCAAGGGCTTGATTCACTGGTCATAACTCCCATTTCACAAGCATC
AGCCAAGCAGCGAGCTTGGGCGTGCAGGGCGTACGGGGCCTGGAAAATGG
TACCGGTTATACACAGAGAGCGCTTACCGCAATTGAGATGTCCCCTACAT
CAATTCCAGAAATCCAAGGATCAATCTTTGGATTTACTACTCTTACAATG
AAG
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