CF505028
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 2.824e-31 Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 +HL+ GDIL+F+ GQE+I+ + E ++ L +N P L +LP+YS LPS++Q++IF AP G RK +VATNIAE SLT+DGI +VID G+ K V+NP+ G+D+L I PISQA+A QR+ Sbjct: 734 VHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEEL-ENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRS 854
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 2.824e-31 Identity = 64/122 (52.46%), Postives = 90/122 (73.77%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 +HL+ GDIL+F+ GQE+I+ + E ++ L +N P L +LP+YS LPS++Q++IF AP G RK +VATNIAE SLT+DGI +VID G+ K V+NP+ G+D+L I PISQA+A QR+ Sbjct: 734 VHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEEL-ENAPALAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQIYPISQANANQRS 854
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP2_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2 OS=Saccharomyces cerevisiae GN=PRP2 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 5.326e-30 Identity = 71/133 (53.38%), Postives = 84/133 (63.16%), Query Frame = 1 Query: 1 IHLTEP-EGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAWACRAYGAWK 396 IH T+ GDIL+FLTGQEEI+ L E M LG ++II P+Y+ LP E Q +IF P P RKVV+ATNIAE SLTIDGI YVIDPGF K+N Y P G+ L+ P S+AS QRA G K Sbjct: 428 IHTTQSLPGDILVFLTGQEEIERTKTKLEEIMSKLGSRTKQMIITPIYANLPQEQQLKIFQPTPENCRKVVLATNIAETSLTIDGIRYVIDPGFVKENSYVPSTGMTQLLTVPCSRASVDQRAGRAGRVGPGK 560
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX35_CAEEL (Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis elegans GN=Y67D2.6 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.130e-29 Identity = 62/122 (50.82%), Postives = 82/122 (67.21%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IH E GDIL+FLTGQ+E++ C+ L E + G KN L ++P Y ALP+ Q + FD P G RKVVVATNIAEAS+TI GI YVID G+ K + G+++L+ +S+ASA+QRA Sbjct: 290 IHKHENPGDILVFLTGQDEVEDVCEKLRE-LAGNLKNCDRLWVVPCYGALPAREQMKAFDSTPHGTRKVVVATNIAEASITIPGICYVIDTGYVKLRAQHAANGVETLMRVTVSKASAEQRA 410 HSP 2 Score: 32.7278 bits (73), Expect = 1.130e-29 Identity = 15/28 (53.57%), Postives = 16/28 (57.14%), Query Frame = 2 Query: 344 KHQPSSELGRAGRTGPGKWYRLYTESAY 427 K GRAGR PGK YRLY ES + Sbjct: 403 KASAEQRAGRAGRIRPGKCYRLYPESEF 430
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP43_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae GN=PRP43 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.187e-29 Identity = 72/134 (53.73%), Postives = 94/134 (70.15%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSL------YERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAP------PGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IH TE GDILLFLTG++EI+ A + + R +G G L + P+Y +LP Q RIF+PAP PG RKVV++TNIAE SLTIDGI YV+DPGF+KQ VYNP+ ++SL+++PIS+ASA+QRA Sbjct: 297 IHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGP----LSVYPLYGSLPPHQQQRIFEPAPESHNGRPG-RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRA 425
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 3.452e-29 Identity = 66/129 (51.16%), Postives = 90/129 (69.77%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKN--VPELIILPVYSALPSEMQSRIFDPAPPGK-----RKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IH+ E GDIL+FLTG+EEI+ AC+ + L + L + P+Y +LP Q RIF+P P RKVV++TNIAE SLTIDGI YV+DPGF+KQ +YNP+ ++SL+++PIS+ASA+QRA Sbjct: 279 IHVEEGPGDILVFLTGEEEIEDACRKITLEADDLVREGAAGPLKVYPLYGSLPPNQQQRIFEPTPEDTKSGYGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRA 407
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 1.312e-28 Identity = 64/122 (52.46%), Postives = 86/122 (70.49%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IH E GDIL+FLTG+EEI+ C + + G +P + LP+YS+LP QS+IFD +RK +V+TNIAE SLTIDGI +V+DPGF+KQ YNP+ ++SL++ PIS+ASA QRA Sbjct: 280 IHTNEGTGDILVFLTGEEEIEDTCAKIQRETRERG--LPPMKTLPLYSSLPIYQQSKIFDTCK--ERKCIVSTNIAETSLTIDGIVFVVDPGFSKQKTYNPRSRVESLLVAPISKASANQRA 397
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRP16_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Saccharomyces cerevisiae GN=PRP16 PE=1 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 4.985e-28 Identity = 69/133 (51.88%), Postives = 92/133 (69.17%), Query Frame = 1 Query: 1 IHLTEP--EGDILLFLTGQEEIDFACQSLYERM-----KGLG----KNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IHL GDIL+F+TGQE+I+ +L E+ K G + + ++ ILP+YSALP+++Q +IF KRK+++ATNIAE SLTI GI YVID G++K VYNPK GLDSLVITPIS+A+A QR+ Sbjct: 555 IHLANDCSSGDILIFMTGQEDIETTFDTLQEKFLQVYSKKFGTANFEEINDIEILPIYSALPADLQFKIFQDLHGTKRKIIIATNIAETSLTIKGIRYVIDCGYSKLKVYNPKIGLDSLVITPISKANADQRS 687
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 1.894e-27 Identity = 62/124 (50.00%), Postives = 83/124 (66.94%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPE--LIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IH TE +GDIL FLTGQEE++ L E+ + L + + L +LP+Y+ LPS Q ++F+ RKV+VATN+AE S+TI GI YVID GF K YNP+ ++ LV+ P+SQASA QRA Sbjct: 268 IHQTEGDGDILAFLTGQEEVETVVSMLIEQARALARTGMKRHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRA 391
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX35_HUMAN (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 2.474e-27 Identity = 61/124 (49.19%), Postives = 83/124 (66.94%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPE--LIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IH TE +GD+L FLTGQEE++ L E+ + L + + L +LP+Y+ LPS Q ++F+ RKV+VATN+AE S+TI GI YVID GF K YNP+ ++ LV+ P+SQASA QRA Sbjct: 268 IHQTEGDGDVLAFLTGQEEVETVVSMLIEQARALARTGMKRHLRVLPMYAGLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECLVVVPVSQASANQRA 391 The following BLAST results are available for this feature:
BLAST of CF505028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CF505028 ID=CF505028; Name=CF505028; organism=Citrus sinensis; type=EST; length=503bpback to top |