CF505028

Overview
NameCF505028
Unique NameCF505028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX40_RAT (Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus GN=Dhx40 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.228e-26
Identity = 62/129 (48.06%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKN-------VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IHL E  GDIL+FLTGQ EI+ +C+ L++  + +  +       +  L+ILP Y ++ ++ Q RIF P PPG RK V++TNI+  SLTIDGI YV+D GF KQ  +NP+ GLD L + PIS++ A QR+
Sbjct:  266 IHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX40_PONAB (Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.228e-26
Identity = 62/129 (48.06%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKN-------VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IHL E  GDIL+FLTGQ EI+ +C+ L++  + +  +       +  L+ILP Y ++ ++ Q RIF P PPG RK V++TNI+  SLTIDGI YV+D GF KQ  +NP+ GLD L + PIS++ A QR+
Sbjct:  266 IHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX40_MOUSE (Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.228e-26
Identity = 62/129 (48.06%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKN-------VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IHL E  GDIL+FLTGQ EI+ +C+ L++  + +  +       +  L+ILP Y ++ ++ Q RIF P PPG RK V++TNI+  SLTIDGI YV+D GF KQ  +NP+ GLD L + PIS++ A QR+
Sbjct:  266 IHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX40_HUMAN (Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 1.228e-26
Identity = 62/129 (48.06%), Postives = 87/129 (67.44%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKN-------VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IHL E  GDIL+FLTGQ EI+ +C+ L++  + +  +       +  L+ILP Y ++ ++ Q RIF P PPG RK V++TNI+  SLTIDGI YV+D GF KQ  +NP+ GLD L + PIS++ A QR+
Sbjct:  266 IHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX33_HUMAN (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.400e-26
Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 IHLTEPEG-DILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363
            IH   P   DIL+FLTGQEEI+   ++  +  K L    P +++LP+Y++LP   Q R+F  AP G RKV+++TNIAE S+TI GI YV+D G  K   YNP  GL+ L +  +S+  A QR
Sbjct:  281 IHQEAPSSQDILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQR 402          

HSP 2 Score: 29.6462 bits (65), Expect = 1.400e-26
Identity = 19/43 (44.19%), Postives = 20/43 (46.51%), Query Frame = 2
Query:  344 KHQPSSELGRAGRTGPGKWYRLYTESAYRN*D---VPYINSRN 463
            K Q     GRAGR   G  YRLYTE  +   D   VP I   N
Sbjct:  396 KTQAWQRTGRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCN 438          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX33_MOUSE (Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.231e-26
Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    1 IHLTEPEG-DILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363
            IH   P   DIL+FLTGQEEI+   ++  +  + L    P +++LP+Y++LP   Q R+F  AP G RKV+++TNIAE S+TI GI YV+D G  K   YNP  GL+ L +  +S+  A QR
Sbjct:  272 IHQEAPASQDILVFLTGQEEIEAMSKTCRDIARHLPDGCPSMLVLPLYASLPYSQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQR 393          

HSP 2 Score: 28.4906 bits (62), Expect = 5.231e-26
Identity = 14/28 (50.00%), Postives = 15/28 (53.57%), Query Frame = 2
Query:  344 KHQPSSELGRAGRTGPGKWYRLYTESAY 427
            K Q     GRAGR   G  YRLYTE  +
Sbjct:  387 KTQAWQRTGRAGREDSGICYRLYTEDEF 414          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 3.950e-25
Identity = 59/122 (48.36%), Postives = 82/122 (67.21%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            +H   P GDIL+FLTGQ+EI+     +    K L  N+P++   P++++LP E Q ++F PA    RKVV++TNIAE S+TI GI YVID G AK   +N K GL+SL + PISQ++A QR+
Sbjct:  298 LHTKLPPGDILVFLTGQDEIEALEALIKSYSKQLPSNLPQIQACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGLAKIKQFNSKLGLESLTVQPISQSAAMQRS 419          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX34_MOUSE (Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.823e-22
Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = 1
Query:   13 EPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363
            E  GD+L+FL+G  EI     ++ +  +         ++LP++SAL    Q ++FD AP G RK +++TNIAE S+TIDGI +V+D G  K+  Y+P+  L  L    ISQASA+QR
Sbjct:  378 EERGDLLVFLSGMAEIT----TVLDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQR 490          

HSP 2 Score: 36.5798 bits (83), Expect = 1.823e-22
Identity = 16/20 (80.00%), Postives = 16/20 (80.00%), Query Frame = 2
Query:  368 GRAGRTGPGKWYRLYTESAY 427
            GRAGRTGPG  YRLY ES Y
Sbjct:  492 GRAGRTGPGVCYRLYAESDY 511          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: YK16_SCHPO (Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe GN=SPAPB1A10.06c PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.495e-21
Identity = 57/166 (34.34%), Postives = 80/166 (48.19%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYER-------MKGLGKNVPE-------------------------------------LIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            IH   P G IL+FLTGQ+E++  CQ L +R       +K   + V                                       + +LP+YS L +E Q ++FD +P G R  +VATN+AE S+TI  I YV+D G AK+ VYN K  +    +  IS+A+A QRA
Sbjct:  618 IHKRLPAGSILVFLTGQQEVEQLCQMLRKRFVRSFRPLKSRARIVVSRKTMSVENEDLQSETEDIDQVPTSSSSSVTYDDESEPMYVLPLYSLLTTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVDCGKAKERVYNEKTSVQKFEVRWISKANADQRA 783          

HSP 2 Score: 33.8834 bits (76), Expect = 1.495e-21
Identity = 14/28 (50.00%), Postives = 17/28 (60.71%), Query Frame = 2
Query:  344 KHQPSSELGRAGRTGPGKWYRLYTESAY 427
            K       GRAGRTGPG  YRLY+ + +
Sbjct:  776 KANADQRAGRAGRTGPGHCYRLYSSAVF 803          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: YK99_SCHPO (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Schizosaccharomyces pombe GN=SPAC20H4.09 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.553e-21
Identity = 51/122 (41.80%), Postives = 80/122 (65.57%), Query Frame = 1
Query:    1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            I+ T P GDIL+FL+G++EI++  + + + +    ++   L+ LP+++ L  + Q R+F+      RKV+ +TNIAE S+TIDGI YV+D GF KQ +YNP      L+  PIS++SA QR+
Sbjct:  230 INSTYPPGDILVFLSGRKEIEYCIKKIEDSLIHASEDCQTLVPLPLHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKLINVPISKSSAIQRS 351          
The following BLAST results are available for this feature:
BLAST of CF505028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
DHX40_RAT1.228e-2648.06Probable ATP-dependent RNA helicase DHX40 OS=Rattu... [more]
DHX40_PONAB1.228e-2648.06Probable ATP-dependent RNA helicase DHX40 OS=Pongo... [more]
DHX40_MOUSE1.228e-2648.06Probable ATP-dependent RNA helicase DHX40 OS=Mus m... [more]
DHX40_HUMAN1.228e-2648.06Probable ATP-dependent RNA helicase DHX40 OS=Homo ... [more]
DHX33_HUMAN1.400e-2645.90Putative ATP-dependent RNA helicase DHX33 OS=Homo ... [more]
DHX33_MOUSE5.231e-2645.08Putative ATP-dependent RNA helicase DHX33 OS=Mus m... [more]
PRH1_SCHPO3.950e-2548.36Probable ATP-dependent RNA helicase prh1 OS=Schizo... [more]
DHX34_MOUSE1.823e-2241.88Probable ATP-dependent RNA helicase DHX34 OS=Mus m... [more]
YK16_SCHPO1.495e-2134.34Putative ATP-dependent RNA helicase PB1A10.06c OS=... [more]
YK99_SCHPO1.553e-2141.80Putative pre-mRNA-splicing factor ATP-dependent RN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505028 ID=CF505028; Name=CF505028; organism=Citrus sinensis; type=EST; length=503bp
ATCCATTTGACAGAGCCTGAAGGTGATATTCTTCTCTTCTTGACTGGGCA
GGAGGAGATTGATTTTGCATGCCAGTCTCTTTATGAGAGGATGAAAGGTC
TAGGTAAAAATGTTCCTGAGCTAATCATATTACCGGTTTACAGTGCCCTC
CCTAGTGAAATGCAATCTAGAATATTTGACCCTGCCCCGCCAGGAAAGAG
AAAAGTGGTTGTGGCCACTAATATTGCTGAAGCTTCTTTGACAATTGATG
GAATATTCTATGTTATCGATCCTGGGTTTGCGAAACAGAATGTTTATAAT
CCAAAGCAAGGGCTTGATTCACTGGTCATAACTCCCATTTCACAAGCATC
AGCCAAGCAGCGAGCTTGGGCGTGCAGGGCGTACGGGGCCTGGAAAATGG
TACCGGTTATACACAGAGAGCGCTTACCGCAATTGAGATGTCCCCTACAT
CAATTCCAGAAATCCAAGGATCAATCTTTGGATTTACTACTCTTACAATG
AAG
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