CF505028
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX40_RAT (Probable ATP-dependent RNA helicase DHX40 OS=Rattus norvegicus GN=Dhx40 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.228e-26 Identity = 62/129 (48.06%), Postives = 87/129 (67.44%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKN-------VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IHL E GDIL+FLTGQ EI+ +C+ L++ + + + + L+ILP Y ++ ++ Q RIF P PPG RK V++TNI+ SLTIDGI YV+D GF KQ +NP+ GLD L + PIS++ A QR+ Sbjct: 266 IHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX40_PONAB (Probable ATP-dependent RNA helicase DHX40 OS=Pongo abelii GN=DHX40 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.228e-26 Identity = 62/129 (48.06%), Postives = 87/129 (67.44%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKN-------VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IHL E GDIL+FLTGQ EI+ +C+ L++ + + + + L+ILP Y ++ ++ Q RIF P PPG RK V++TNI+ SLTIDGI YV+D GF KQ +NP+ GLD L + PIS++ A QR+ Sbjct: 266 IHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX40_MOUSE (Probable ATP-dependent RNA helicase DHX40 OS=Mus musculus GN=Dhx40 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.228e-26 Identity = 62/129 (48.06%), Postives = 87/129 (67.44%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKN-------VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IHL E GDIL+FLTGQ EI+ +C+ L++ + + + + L+ILP Y ++ ++ Q RIF P PPG RK V++TNI+ SLTIDGI YV+D GF KQ +NP+ GLD L + PIS++ A QR+ Sbjct: 266 IHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX40_HUMAN (Probable ATP-dependent RNA helicase DHX40 OS=Homo sapiens GN=DHX40 PE=1 SV=2) HSP 1 Score: 119.013 bits (297), Expect = 1.228e-26 Identity = 62/129 (48.06%), Postives = 87/129 (67.44%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKN-------VPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IHL E GDIL+FLTGQ EI+ +C+ L++ + + + + L+ILP Y ++ ++ Q RIF P PPG RK V++TNI+ SLTIDGI YV+D GF KQ +NP+ GLD L + PIS++ A QR+ Sbjct: 266 IHLNEMAGDILVFLTGQFEIEKSCELLFQMAESVDYDYDVQDTTLDGLLILPCYGSMTTDQQRRIFLPPPPGIRKCVISTNISATSLTIDGIRYVVDGGFVKQLNHNPRLGLDILEVVPISKSEALQRS 394
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX33_HUMAN (Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.400e-26 Identity = 56/122 (45.90%), Postives = 77/122 (63.11%), Query Frame = 1 Query: 1 IHLTEPEG-DILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363 IH P DIL+FLTGQEEI+ ++ + K L P +++LP+Y++LP Q R+F AP G RKV+++TNIAE S+TI GI YV+D G K YNP GL+ L + +S+ A QR Sbjct: 281 IHQEAPSSQDILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQR 402 HSP 2 Score: 29.6462 bits (65), Expect = 1.400e-26 Identity = 19/43 (44.19%), Postives = 20/43 (46.51%), Query Frame = 2 Query: 344 KHQPSSELGRAGRTGPGKWYRLYTESAYRN*D---VPYINSRN 463 K Q GRAGR G YRLYTE + D VP I N Sbjct: 396 KTQAWQRTGRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCN 438
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX33_MOUSE (Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.231e-26 Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 1 Query: 1 IHLTEPEG-DILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363 IH P DIL+FLTGQEEI+ ++ + + L P +++LP+Y++LP Q R+F AP G RKV+++TNIAE S+TI GI YV+D G K YNP GL+ L + +S+ A QR Sbjct: 272 IHQEAPASQDILVFLTGQEEIEAMSKTCRDIARHLPDGCPSMLVLPLYASLPYSQQLRVFQGAPKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQR 393 HSP 2 Score: 28.4906 bits (62), Expect = 5.231e-26 Identity = 14/28 (50.00%), Postives = 15/28 (53.57%), Query Frame = 2 Query: 344 KHQPSSELGRAGRTGPGKWYRLYTESAY 427 K Q GRAGR G YRLYTE + Sbjct: 387 KTQAWQRTGRAGREDSGICYRLYTEDEF 414
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 3.950e-25 Identity = 59/122 (48.36%), Postives = 82/122 (67.21%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 +H P GDIL+FLTGQ+EI+ + K L N+P++ P++++LP E Q ++F PA RKVV++TNIAE S+TI GI YVID G AK +N K GL+SL + PISQ++A QR+ Sbjct: 298 LHTKLPPGDILVFLTGQDEIEALEALIKSYSKQLPSNLPQIQACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGLAKIKQFNSKLGLESLTVQPISQSAAMQRS 419
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX34_MOUSE (Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34 PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 1.823e-22 Identity = 49/117 (41.88%), Postives = 72/117 (61.54%), Query Frame = 1 Query: 13 EPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363 E GD+L+FL+G EI ++ + + ++LP++SAL Q ++FD AP G RK +++TNIAE S+TIDGI +V+D G K+ Y+P+ L L ISQASA+QR Sbjct: 378 EERGDLLVFLSGMAEIT----TVLDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQR 490 HSP 2 Score: 36.5798 bits (83), Expect = 1.823e-22 Identity = 16/20 (80.00%), Postives = 16/20 (80.00%), Query Frame = 2 Query: 368 GRAGRTGPGKWYRLYTESAY 427 GRAGRTGPG YRLY ES Y Sbjct: 492 GRAGRTGPGVCYRLYAESDY 511
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: YK16_SCHPO (Putative ATP-dependent RNA helicase PB1A10.06c OS=Schizosaccharomyces pombe GN=SPAPB1A10.06c PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.495e-21 Identity = 57/166 (34.34%), Postives = 80/166 (48.19%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYER-------MKGLGKNVPE-------------------------------------LIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 IH P G IL+FLTGQ+E++ CQ L +R +K + V + +LP+YS L +E Q ++FD +P G R +VATN+AE S+TI I YV+D G AK+ VYN K + + IS+A+A QRA Sbjct: 618 IHKRLPAGSILVFLTGQQEVEQLCQMLRKRFVRSFRPLKSRARIVVSRKTMSVENEDLQSETEDIDQVPTSSSSSVTYDDESEPMYVLPLYSLLTTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVDCGKAKERVYNEKTSVQKFEVRWISKANADQRA 783 HSP 2 Score: 33.8834 bits (76), Expect = 1.495e-21 Identity = 14/28 (50.00%), Postives = 17/28 (60.71%), Query Frame = 2 Query: 344 KHQPSSELGRAGRTGPGKWYRLYTESAY 427 K GRAGRTGPG YRLY+ + + Sbjct: 776 KANADQRAGRAGRTGPGHCYRLYSSAVF 803
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: YK99_SCHPO (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase C20H4.09 OS=Schizosaccharomyces pombe GN=SPAC20H4.09 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.553e-21 Identity = 51/122 (41.80%), Postives = 80/122 (65.57%), Query Frame = 1 Query: 1 IHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 I+ T P GDIL+FL+G++EI++ + + + + ++ L+ LP+++ L + Q R+F+ RKV+ +TNIAE S+TIDGI YV+D GF KQ +YNP L+ PIS++SA QR+ Sbjct: 230 INSTYPPGDILVFLSGRKEIEYCIKKIEDSLIHASEDCQTLVPLPLHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKLINVPISKSSAIQRS 351 The following BLAST results are available for this feature:
BLAST of CF505028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CF505028 ID=CF505028; Name=CF505028; organism=Citrus sinensis; type=EST; length=503bpback to top |