CF505028

Overview
NameCF505028
Unique NameCF505028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: HRPA_ECOLI (ATP-dependent RNA helicase hrpA OS=Escherichia coli (strain K12) GN=hrpA PE=3 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 6.753e-17
Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 1
Query:   13 EPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAWAC 375
            E  GDIL+F++G+ EI     +L +       N+    ILP+Y+ L +  Q+R+F       R++V+ATN+AE SLT+ GI YVIDPG A+ + Y+ +  +  L I PISQASA QR   C
Sbjct:  288 ESHGDILIFMSGEREIRDTADALNKL------NLRHTEILPLYARLSNSEQNRVFQSH--SGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRC 400          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: RHA2_CAEEL (Putative ATP-dependent RNA helicase rha-2 OS=Caenorhabditis elegans GN=rha-2 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 7.100e-17
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 1
Query:  121 LIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366
            L  LP+YS L    Q R+FD  P G R  V++TN+AE SLTI G+ YVID GF K+ +Y+   G+    +  ISQAS  QRA
Sbjct:  575 LYCLPLYSLLSMGKQRRVFDETPAGMRLCVISTNVAETSLTIPGVKYVIDGGFEKRRLYDSITGVSRFAVCRISQASGDQRA 656          

HSP 2 Score: 27.7202 bits (60), Expect = 7.100e-17
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 2
Query:  368 GRAGRTGPGKWYRLYTESAYRN 433
            GRAGR   G  YRLY+ + Y++
Sbjct:  657 GRAGRISAGHAYRLYSSAVYQD 678          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX30_CHICK (Putative ATP-dependent RNA helicase DHX30 OS=Gallus gallus GN=DHX30 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16
Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 1
Query:   22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQ---RAWACRAYGAWKMVPVIHRERLPQLRCP 444
            G IL FL G +EI    Q L E    LG      ++LPV+S +P   Q  IF   PPG RK+V+ATNIAE S+TI+ I +V+D G  K+  Y+ K  +  L    +S+++  Q   RA  C++  A+ + P    +++P  + P
Sbjct:  712 GGILCFLPGWQEIKGVQQRLLEM---LGSQNSRYLVLPVHSNIPMMDQQNIFQRPPPGVRKIVLATNIAETSITINDIVHVVDSGTHKEERYDLKTKVSCLETVWVSKSNVVQRRGRAGRCQSGFAYHLFPRSRLDKMPTYQVP 852          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.617e-16
Identity = 45/114 (39.47%), Postives = 69/114 (60.53%), Query Frame = 1
Query:   22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363
            G IL+F  G  EI  A  ++   ++G  K    + ILP+++ L ++ Q R+F P   G+RK+VV+TN+AE S+TI  + YV+D G  K+  + P+ GL  LV    S+A+ KQR
Sbjct: 1026 GAILVFCPGVGEIRQAIDAITTSVRGQSK----VEILPLHANLSADEQRRVFQPVGAGRRKIVVSTNVAETSITIPDVSYVVDTGRVKETRFEPESGLTRLVECWASRAACKQR 1135          

HSP 2 Score: 23.0978 bits (48), Expect = 2.617e-16
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 2
Query:  368 GRAGRTGPGKWYRLYT 415
            GRAGR   G+ +RLY+
Sbjct: 1137 GRAGRVRAGECFRLYS 1152          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX34_HUMAN (Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.512e-16
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1
Query:  172 IFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363
            +FD APPG RK +++TNIAE S+TIDGI +V+D G  K+  Y+P+  L  L    ISQASA+QR
Sbjct:  340 VFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQR 403          

HSP 2 Score: 35.039 bits (79), Expect = 4.512e-16
Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 2
Query:  368 GRAGRTGPGKWYRLYTESAY 427
            GRAGRTGPG  +RLY ES Y
Sbjct:  405 GRAGRTGPGVCFRLYAESDY 424          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX30_HUMAN (Putative ATP-dependent RNA helicase DHX30 OS=Homo sapiens GN=DHX30 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.466e-16
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 1
Query:   22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQ---RAWACRAYGAWKMVPVIHRERLPQLRCP 444
            G IL FL G +EI    Q L E    LG +  + +ILPV+S +P   Q  IF   P G RK+V+ATNIAE S+TI+ I +V+D G  K+  Y+ K  +  L    +S+A+  Q   RA  C++  A+ + P    E++   + P
Sbjct:  669 GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPPVGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVP 809          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX30_BOVIN (Putative ATP-dependent RNA helicase DHX30 OS=Bos taurus GN=DHX30 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.466e-16
Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 1
Query:   22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQ---RAWACRAYGAWKMVPVIHRERLPQLRCP 444
            G IL FL G +EI    Q L E    LG +  + +ILPV+S +P   Q  IF   P G RK+V+ATNIAE S+TI+ I +V+D G  K+  Y+ K  +  L    +S+A+  Q   RA  C++  A+ + P    E++   + P
Sbjct:  695 GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPPIGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMAPFQVP 835          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX30_RAT (Putative ATP-dependent RNA helicase DHX30 OS=Rattus norvegicus GN=Dhx30 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 1
Query:   22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQ---RAWACRAYGAWKMVPVIHRERLPQLRCP 444
            G IL FL G +EI    Q L E    LG +  + +ILPV+S +P   Q  IF   P G RK+V+ATNIAE S+T++ I +V+D G  K+  Y+ K  +  L    +S+A+  Q   RA  C++  A+ + P    E++   + P
Sbjct:  669 GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPPLGVRKIVLATNIAETSITVNDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVP 809          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX30_MOUSE (Putative ATP-dependent RNA helicase DHX30 OS=Mus musculus GN=Dhx30 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 1
Query:   22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQ---RAWACRAYGAWKMVPVIHRERLPQLRCP 444
            G IL FL G +EI    Q L E    LG +  + +ILPV+S +P   Q  IF   P G RK+V+ATNIAE S+T++ I +V+D G  K+  Y+ K  +  L    +S+A+  Q   RA  C++  A+ + P    E++   + P
Sbjct:  692 GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPPLGVRKIVLATNIAETSITVNDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVP 832          
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX30_PONAB (Putative ATP-dependent RNA helicase DHX30 OS=Pongo abelii GN=DHX30 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.663e-15
Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQ---RAWACRAYGAWKMVPVIHRERLPQLRCP 444
            G IL FL G +EI    Q L E    LG +  + +ILPV+S +P   Q  IF   P G RK+V+ATNIAE S TI+ I +V+D G  K+  Y+ K  +  L    +S+A+  Q   RA  C++  A+ + P    E++   + P
Sbjct:  669 GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPPVGVRKIVLATNIAETSTTINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVP 809          
The following BLAST results are available for this feature:
BLAST of CF505028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
HRPA_ECOLI6.753e-1742.15ATP-dependent RNA helicase hrpA OS=Escherichia col... [more]
RHA2_CAEEL7.100e-1748.78Putative ATP-dependent RNA helicase rha-2 OS=Caeno... [more]
DHX30_CHICK1.504e-1636.81Putative ATP-dependent RNA helicase DHX30 OS=Gallu... [more]
YUM14_USTMA2.617e-1639.47Putative DEAH-box ATP-dependent helicase UM11114 O... [more]
DHX34_HUMAN4.512e-1654.69Probable ATP-dependent RNA helicase DHX34 OS=Homo ... [more]
DHX30_HUMAN7.466e-1637.50Putative ATP-dependent RNA helicase DHX30 OS=Homo ... [more]
DHX30_BOVIN7.466e-1637.50Putative ATP-dependent RNA helicase DHX30 OS=Bos t... [more]
DHX30_RAT1.274e-1536.81Putative ATP-dependent RNA helicase DHX30 OS=Rattu... [more]
DHX30_MOUSE1.274e-1536.81Putative ATP-dependent RNA helicase DHX30 OS=Mus m... [more]
DHX30_PONAB1.663e-1537.50Putative ATP-dependent RNA helicase DHX30 OS=Pongo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505028 ID=CF505028; Name=CF505028; organism=Citrus sinensis; type=EST; length=503bp
ATCCATTTGACAGAGCCTGAAGGTGATATTCTTCTCTTCTTGACTGGGCA
GGAGGAGATTGATTTTGCATGCCAGTCTCTTTATGAGAGGATGAAAGGTC
TAGGTAAAAATGTTCCTGAGCTAATCATATTACCGGTTTACAGTGCCCTC
CCTAGTGAAATGCAATCTAGAATATTTGACCCTGCCCCGCCAGGAAAGAG
AAAAGTGGTTGTGGCCACTAATATTGCTGAAGCTTCTTTGACAATTGATG
GAATATTCTATGTTATCGATCCTGGGTTTGCGAAACAGAATGTTTATAAT
CCAAAGCAAGGGCTTGATTCACTGGTCATAACTCCCATTTCACAAGCATC
AGCCAAGCAGCGAGCTTGGGCGTGCAGGGCGTACGGGGCCTGGAAAATGG
TACCGGTTATACACAGAGAGCGCTTACCGCAATTGAGATGTCCCCTACAT
CAATTCCAGAAATCCAAGGATCAATCTTTGGATTTACTACTCTTACAATG
AAG
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