CF505028
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: HRPA_ECOLI (ATP-dependent RNA helicase hrpA OS=Escherichia coli (strain K12) GN=hrpA PE=3 SV=3) HSP 1 Score: 86.6557 bits (213), Expect = 6.753e-17 Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 1 Query: 13 EPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAWAC 375 E GDIL+F++G+ EI +L + N+ ILP+Y+ L + Q+R+F R++V+ATN+AE SLT+ GI YVIDPG A+ + Y+ + + L I PISQASA QR C Sbjct: 288 ESHGDILIFMSGEREIRDTADALNKL------NLRHTEILPLYARLSNSEQNRVFQSH--SGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRC 400
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: RHA2_CAEEL (Putative ATP-dependent RNA helicase rha-2 OS=Caenorhabditis elegans GN=rha-2 PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 7.100e-17 Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 1 Query: 121 LIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRA 366 L LP+YS L Q R+FD P G R V++TN+AE SLTI G+ YVID GF K+ +Y+ G+ + ISQAS QRA Sbjct: 575 LYCLPLYSLLSMGKQRRVFDETPAGMRLCVISTNVAETSLTIPGVKYVIDGGFEKRRLYDSITGVSRFAVCRISQASGDQRA 656 HSP 2 Score: 27.7202 bits (60), Expect = 7.100e-17 Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 2 Query: 368 GRAGRTGPGKWYRLYTESAYRN 433 GRAGR G YRLY+ + Y++ Sbjct: 657 GRAGRISAGHAYRLYSSAVYQD 678
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX30_CHICK (Putative ATP-dependent RNA helicase DHX30 OS=Gallus gallus GN=DHX30 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.504e-16 Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 1 Query: 22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQ---RAWACRAYGAWKMVPVIHRERLPQLRCP 444 G IL FL G +EI Q L E LG ++LPV+S +P Q IF PPG RK+V+ATNIAE S+TI+ I +V+D G K+ Y+ K + L +S+++ Q RA C++ A+ + P +++P + P Sbjct: 712 GGILCFLPGWQEIKGVQQRLLEM---LGSQNSRYLVLPVHSNIPMMDQQNIFQRPPPGVRKIVLATNIAETSITINDIVHVVDSGTHKEERYDLKTKVSCLETVWVSKSNVVQRRGRAGRCQSGFAYHLFPRSRLDKMPTYQVP 852
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: YUM14_USTMA (Putative DEAH-box ATP-dependent helicase UM11114 OS=Ustilago maydis GN=UM11114 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 2.617e-16 Identity = 45/114 (39.47%), Postives = 69/114 (60.53%), Query Frame = 1 Query: 22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363 G IL+F G EI A ++ ++G K + ILP+++ L ++ Q R+F P G+RK+VV+TN+AE S+TI + YV+D G K+ + P+ GL LV S+A+ KQR Sbjct: 1026 GAILVFCPGVGEIRQAIDAITTSVRGQSK----VEILPLHANLSADEQRRVFQPVGAGRRKIVVSTNVAETSITIPDVSYVVDTGRVKETRFEPESGLTRLVECWASRAACKQR 1135 HSP 2 Score: 23.0978 bits (48), Expect = 2.617e-16 Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 2 Query: 368 GRAGRTGPGKWYRLYT 415 GRAGR G+ +RLY+ Sbjct: 1137 GRAGRVRAGECFRLYS 1152
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX34_HUMAN (Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.512e-16 Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1 Query: 172 IFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363 +FD APPG RK +++TNIAE S+TIDGI +V+D G K+ Y+P+ L L ISQASA+QR Sbjct: 340 VFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQR 403 HSP 2 Score: 35.039 bits (79), Expect = 4.512e-16 Identity = 15/20 (75.00%), Postives = 16/20 (80.00%), Query Frame = 2 Query: 368 GRAGRTGPGKWYRLYTESAY 427 GRAGRTGPG +RLY ES Y Sbjct: 405 GRAGRTGPGVCFRLYAESDY 424
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX30_HUMAN (Putative ATP-dependent RNA helicase DHX30 OS=Homo sapiens GN=DHX30 PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 7.466e-16 Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 1 Query: 22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQ---RAWACRAYGAWKMVPVIHRERLPQLRCP 444 G IL FL G +EI Q L E LG + + +ILPV+S +P Q IF P G RK+V+ATNIAE S+TI+ I +V+D G K+ Y+ K + L +S+A+ Q RA C++ A+ + P E++ + P Sbjct: 669 GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPPVGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVP 809
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX30_BOVIN (Putative ATP-dependent RNA helicase DHX30 OS=Bos taurus GN=DHX30 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 7.466e-16 Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 1 Query: 22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQ---RAWACRAYGAWKMVPVIHRERLPQLRCP 444 G IL FL G +EI Q L E LG + + +ILPV+S +P Q IF P G RK+V+ATNIAE S+TI+ I +V+D G K+ Y+ K + L +S+A+ Q RA C++ A+ + P E++ + P Sbjct: 695 GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPPIGVRKIVLATNIAETSITINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMAPFQVP 835
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX30_RAT (Putative ATP-dependent RNA helicase DHX30 OS=Rattus norvegicus GN=Dhx30 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15 Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 1 Query: 22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQ---RAWACRAYGAWKMVPVIHRERLPQLRCP 444 G IL FL G +EI Q L E LG + + +ILPV+S +P Q IF P G RK+V+ATNIAE S+T++ I +V+D G K+ Y+ K + L +S+A+ Q RA C++ A+ + P E++ + P Sbjct: 669 GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPPLGVRKIVLATNIAETSITVNDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVP 809
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX30_MOUSE (Putative ATP-dependent RNA helicase DHX30 OS=Mus musculus GN=Dhx30 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15 Identity = 53/144 (36.81%), Postives = 79/144 (54.86%), Query Frame = 1 Query: 22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQ---RAWACRAYGAWKMVPVIHRERLPQLRCP 444 G IL FL G +EI Q L E LG + + +ILPV+S +P Q IF P G RK+V+ATNIAE S+T++ I +V+D G K+ Y+ K + L +S+A+ Q RA C++ A+ + P E++ + P Sbjct: 692 GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPPLGVRKIVLATNIAETSITVNDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVP 832
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX30_PONAB (Putative ATP-dependent RNA helicase DHX30 OS=Pongo abelii GN=DHX30 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.663e-15 Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 1 Query: 22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQ---RAWACRAYGAWKMVPVIHRERLPQLRCP 444 G IL FL G +EI Q L E LG + + +ILPV+S +P Q IF P G RK+V+ATNIAE S TI+ I +V+D G K+ Y+ K + L +S+A+ Q RA C++ A+ + P E++ + P Sbjct: 669 GGILCFLPGWQEIKGVQQRLQE---ALGMHESKYLILPVHSNIPMMDQKAIFQQPPVGVRKIVLATNIAETSTTINDIVHVVDSGLHKEERYDLKTKVSCLETVWVSRANVIQRRGRAGRCQSGFAYHLFPRSRLEKMVPFQVP 809 The following BLAST results are available for this feature:
BLAST of CF505028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CF505028 ID=CF505028; Name=CF505028; organism=Citrus sinensis; type=EST; length=503bpback to top |