CF505028

Overview
NameCF505028
Unique NameCF505028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: MLE_DROME (Dosage compensation regulator OS=Drosophila melanogaster GN=mle PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:   22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363
            G IL+FL G   I FA     +     G +  +  ILP +S +P + Q ++F+P P G  K++++TNIAE S+TID I +VID   A+  ++     L S      S+ + +QR
Sbjct:  654 GAILVFLPGWNLI-FALMKFLQNTNIFG-DTSQYQILPCHSQIPRDEQRKVFEPVPEGVTKIILSTNIAETSITIDDIVFVIDICKARMKLFTSHNNLTSYATVWASKTNLEQR 765
[Close]
BLAST of CF505028 vs. ExPASy Swiss-Prot
Match: DHX9_MOUSE (ATP-dependent RNA helicase A OS=Mus musculus GN=Dhx9 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:   22 GDILLFLTGQEEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQR 363
            G +L+FL G   I +  Q   E     G +  +  ILP++S +P E Q ++FDP P G  KV+++TNIAE S+TI+ + YVID    K  ++     + +      S+ + +QR
Sbjct:  653 GAVLVFLPGWNLI-YTMQKHLENNSHFGSHRYQ--ILPLHSQIPREEQRKVFDPVPDGVTKVILSTNIAETSITINDVVYVIDSCKQKVKLFTAHNNMTNYATVWASKTNLEQR 763
The following BLAST results are available for this feature:
BLAST of CF505028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MLE_DROME3.246e-1135.09Dosage compensation regulator OS=Drosophila melano... [more]
DHX9_MOUSE7.232e-1134.21ATP-dependent RNA helicase A OS=Mus musculus GN=Dh... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-521 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505028 ID=CF505028; Name=CF505028; organism=Citrus sinensis; type=EST; length=503bp
ATCCATTTGACAGAGCCTGAAGGTGATATTCTTCTCTTCTTGACTGGGCA
GGAGGAGATTGATTTTGCATGCCAGTCTCTTTATGAGAGGATGAAAGGTC
TAGGTAAAAATGTTCCTGAGCTAATCATATTACCGGTTTACAGTGCCCTC
CCTAGTGAAATGCAATCTAGAATATTTGACCCTGCCCCGCCAGGAAAGAG
AAAAGTGGTTGTGGCCACTAATATTGCTGAAGCTTCTTTGACAATTGATG
GAATATTCTATGTTATCGATCCTGGGTTTGCGAAACAGAATGTTTATAAT
CCAAAGCAAGGGCTTGATTCACTGGTCATAACTCCCATTTCACAAGCATC
AGCCAAGCAGCGAGCTTGGGCGTGCAGGGCGTACGGGGCCTGGAAAATGG
TACCGGTTATACACAGAGAGCGCTTACCGCAATTGAGATGTCCCCTACAT
CAATTCCAGAAATCCAAGGATCAATCTTTGGATTTACTACTCTTACAATG
AAG
back to top