CF505032

Overview
NameCF505032
Unique NameCF505032
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF505032 vs. ExPASy Swiss-Prot
Match: PER1_SORBI (Cationic peroxidase SPC4 (Fragment) OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.594e-13
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 2
Query:   50 AGAGSLLLVCLVVFGIIGVCQGGELRK---------NFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPNLSL 337
            A A ++  V L+          G  R+         +FY+ SC  AE IVRS        +  L A L+R+HFHDCFV+GCDASVL++ +A    E+ A PNL+L
Sbjct:    8 AAAAAVAAVVLICSSSTATAADGNARQPPLAPGLSFDFYKRSCPKAESIVRSFVQDAVRRDVGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTL 112          
BLAST of CF505032 vs. ExPASy Swiss-Prot
Match: PER1_MAIZE (Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.594e-13
Identity = 39/104 (37.50%), Postives = 56/104 (53.85%), Query Frame = 2
Query:   20 VTSELKMKKAAGAGSLLLVCLVVFGIIGVCQGGELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLIN-STAGNKAERDAVPN 328
            +  E K+     A   ++    +  ++      +LR  FY  SC +AE +VR       A +  + A LIR+HFHDCFVRGCD SVL+  +  G + ERDA+PN
Sbjct:    1 MAKESKLTAGVAAALTVVAACALCLLLPATARAQLRVGFYDTSCPNAEALVRQAVAAAFAKDAGIAAGLIRLHFHDCFVRGCDGSVLLTVNPGGGQTERDALPN 104          
BLAST of CF505032 vs. ExPASy Swiss-Prot
Match: PERN1_TOBAC (Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.082e-13
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 2
Query:   62 SLLLVCLVVFGIIGVCQGGELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPNLSLGG 343
            ++ +V LV+   + +  G   R  FY  +C  AE IV+S    +  S+P +   ++RMHFHDCFV GCD S+LI    G+ AER A+PN +L G
Sbjct:   12 AMFMVILVLAIDVTMVLGQGTRVGFYSSTCPRAESIVQSTVRAHFQSDPTVAPGILRMHFHDCFVLGCDGSILIE---GSDAERTAIPNRNLKG 102          
BLAST of CF505032 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.082e-13
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = 2
Query:   62 SLLLVCLVVFGIIGVCQGGELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPNLS 334
            SL+++   +FG        +L   FY  +C +A  IVRS   +   S+  + A LIR+HFHDCFV GCDAS+L++ T   ++E++A PN++
Sbjct:   16 SLIVIVSSIFGT----SSAQLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEKNAGPNVN 102          
BLAST of CF505032 vs. ExPASy Swiss-Prot
Match: PER9_ARATH (Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 2
Query:  122 LRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPN 328
            L   FY+ SC  A++IV ++  K  A  P + A L+R+HFHDCFV+GCDAS+L++ +A  ++E++A PN
Sbjct:   45 LYPQFYQFSCPQADEIVMTVLEKAIAKEPRMAASLLRLHFHDCFVQGCDASILLDDSATIRSEKNAGPN 113          
BLAST of CF505032 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.719e-13
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  119 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPN 328
            +L   FY +SC +  +IVR I      S+P + A ++R+HFHDCFV GCDAS+L+++T   + E+DA  N
Sbjct:   10 QLTPTFYDNSCPNVSNIVRDIIINELRSDPSIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGN 79          
BLAST of CF505032 vs. ExPASy Swiss-Prot
Match: PER44_ARATH (Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 2
Query:  119 ELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPNLSLGG 343
            +LR  FY  SC  AE IV S+      S+  + A  +RM FHDCFVRGCDAS+LI+   G  +E+   PN S+ G
Sbjct:   21 QLRTGFYSRSCPRAESIVASVVANRFRSDKSITAAFLRMQFHDCFVRGCDASLLIDPRPGRPSEKSTGPNASVRG 95          
BLAST of CF505032 vs. ExPASy Swiss-Prot
Match: PER18_ARATH (Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 2
Query:   62 SLLLVCLVVFGIIGVCQGGELRKNFYRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPNLSLGG 343
            SLLL+ L+   +       EL  NFY  SC  AE IVR+     ++S+P +  KL+R+ FHDCFV+GCD SVLI    GN  ER    N SLGG
Sbjct:   17 SLLLLLLLSSSV------AELSFNFYAGSCPGAELIVRNTVRSASSSDPSVLGKLLRLIFHDCFVQGCDGSVLIR---GNGTERSDPGNASLGG 101          
BLAST of CF505032 vs. ExPASy Swiss-Prot
Match: PER40_ARATH (Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.637e-13
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 2
Query:  137 YRDSCKSAEDIVRSITWKNAASNPDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPNLS 334
            YR+SC  AE IV S        +P + A L+R+HFHDCFV GCDASVL++ T G   E+ A PNL+
Sbjct:   55 YRNSCPEAESIVYSWVETTVLEDPRMAASLLRLHFHDCFVNGCDASVLLDDTEGLVGEKTAPPNLN 120          
BLAST of CF505032 vs. ExPASy Swiss-Prot
Match: PER73_ARATH (Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  119 ELRKNFYRDSCKSAEDIVRSITWKNAASN-PDLPAKLIRMHFHDCFVRGCDASVLINSTAGNKAERDAVPNLSLGG 343
            +L+ NFY +SC + E IV+ +  +        +PA L R+ FHDCFV GCDASV+I ST  NKAE+D   N+SL G
Sbjct:   26 QLKTNFYGNSCPNVEQIVKKVVQEKIKQTFVTIPATL-RLFFHDCFVNGCDASVMIQSTPTNKAEKDHPDNISLAG 100          
The following BLAST results are available for this feature:
BLAST of CF505032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PER1_SORBI1.594e-1339.05Cationic peroxidase SPC4 (Fragment) OS=Sorghum bic... [more]
PER1_MAIZE1.594e-1337.50Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1[more]
PERN1_TOBAC2.082e-1341.49Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 S... [more]
PER53_ARATH2.082e-1339.56Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PER9_ARATH2.719e-1346.38Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 ... [more]
PER1C_ARMRU2.719e-1344.29Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER44_ARATH3.551e-1346.67Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=... [more]
PER18_ARATH3.551e-1346.81Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=... [more]
PER40_ARATH4.637e-1351.52Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=... [more]
PER73_ARATH6.057e-1348.68Peroxidase 73 OS=Arabidopsis thaliana GN=PER73 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-525 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505032 ID=CF505032; Name=CF505032; organism=Citrus sinensis; type=EST; length=343bp
GTTAAACTCATTTCTCTTAGTAACTAGTGAATTAAAGATGAAGAAAGCCG
CTGGGGCTGGGTCTCTTTTGTTAGTTTGCTTAGTAGTTTTTGGTATTATA
GGGGTTTGCCAAGGAGGTGAGCTAAGGAAGAATTTCTACAGGGACAGCTG
TAAATCTGCTGAAGATATCGTCAGGAGCATCACCTGGAAAAATGCCGCCA
GTAACCCTGACTTGCCGGCCAAGCTTATCAGAATGCATTTCCATGACTGC
TTTGTTAGGGGTTGCGATGCGTCGGTTTTGATAAACTCAACTGCAGGTAA
CAAAGCAGAGAGGGATGCAGTTCCGAATCTATCTTTGGGAGGT
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