CF505034 | Citrus Genome Database

Overview


Name	CF505034
Unique Name	CF505034
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	456

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF505034 vs. ExPASy Swiss-Prot
Match: CALM_ONCSP (Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 4.624e-58
Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1

Query:    1 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   31 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  139 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

BLAST of CF505034 vs. ExPASy Swiss-Prot
Match: CALM_MOUSE (Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 4.624e-58
Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1

Query:    1 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   31 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  139 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

BLAST of CF505034 vs. ExPASy Swiss-Prot
Match: CALM_HUMAN (Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 4.624e-58
Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1

Query:    1 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   31 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  139 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

BLAST of CF505034 vs. ExPASy Swiss-Prot
Match: CALM_GECJA (Calmodulin OS=Gecko japonicus GN=GekBS194P PE=2 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 4.624e-58
Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1

Query:    1 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   31 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  139 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

BLAST of CF505034 vs. ExPASy Swiss-Prot
Match: CALM_DANRE (Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 4.624e-58
Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1

Query:    1 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   31 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  139 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

BLAST of CF505034 vs. ExPASy Swiss-Prot
Match: CALM_CTEID (Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2 SV=3)

HSP 1 Score: 223.016 bits (567), Expect = 4.624e-58
Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1

Query:    1 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   31 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  139 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

BLAST of CF505034 vs. ExPASy Swiss-Prot
Match: CALM_CHICK (Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 4.624e-58
Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1

Query:    1 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   31 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  139 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

BLAST of CF505034 vs. ExPASy Swiss-Prot
Match: CALM_BOVIN (Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 4.624e-58
Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1

Query:    1 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   31 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  139 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

BLAST of CF505034 vs. ExPASy Swiss-Prot
Match: CALM_ANAPL (Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 4.624e-58
Identity = 108/119 (90.76%), Postives = 116/119 (97.48%), Query Frame = 1

Query:    1 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL +MARKMKDTDSEEE++EAFRVFDKD NG+ISAAELRHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M AK
Sbjct:   31 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149

HSP 2 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = 1

Query:  139 MKDTDSEE---ELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            M D  +EE   E KEAF +FDKD +G I+  EL  VM +LG+  T+ E+ +MI E D DG+G I++ EF+ +M  K
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 76

BLAST of CF505034 vs. ExPASy Swiss-Prot
Match: CALM2_PETHY (Calmodulin-2 OS=Petunia hybrida GN=CAM72 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 4.624e-58
Identity = 108/119 (90.76%), Postives = 118/119 (99.16%), Query Frame = 1

Query:    1 KELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMAK 357
            KELGTVMRSLGQNPTEAELQDMI+EVDAD NGTIDFPEFLNLMARKMKDTDSEEELKEAF+VFDKDQNG+ISAA++RHVMTNLGEKLTDEEVDEMIREAD+DGDGQ+NYEEFV++M+AK
Sbjct:   31 KELGTVMRSLGQNPTEAELQDMISEVDADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGYISAADVRHVMTNLGEKLTDEEVDEMIREADMDGDGQVNYEEFVRMMLAK 149

The following BLAST results are available for this feature:

BLAST of CF505034 vs. ExPASy Swiss-Prot

BLAST of CF505034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412


Match Name	E-value	Identity	Description
CALM_ONCSP	4.624e-58	90.76	Calmodulin OS=Oncorhynchus sp. GN=calm PE=1 SV=2	[more]
CALM_MOUSE	4.624e-58	90.76	Calmodulin OS=Mus musculus GN=Calm1 PE=1 SV=2	[more]
CALM_HUMAN	4.624e-58	90.76	Calmodulin OS=Homo sapiens GN=CALM1 PE=1 SV=2	[more]
CALM_GECJA	4.624e-58	90.76	Calmodulin OS=Gecko japonicus GN=GekBS194P PE=2 SV...	[more]
CALM_DANRE	4.624e-58	90.76	Calmodulin OS=Danio rerio GN=calm1a PE=2 SV=3	[more]
CALM_CTEID	4.624e-58	90.76	Calmodulin OS=Ctenopharyngodon idella GN=calm PE=2...	[more]
CALM_CHICK	4.624e-58	90.76	Calmodulin OS=Gallus gallus GN=CALM PE=1 SV=2	[more]
CALM_BOVIN	4.624e-58	90.76	Calmodulin OS=Bos taurus GN=CALM PE=1 SV=2	[more]
CALM_ANAPL	4.624e-58	90.76	Calmodulin OS=Anas platyrhynchos GN=CALM PE=2 SV=2	[more]
CALM2_PETHY	4.624e-58	90.76	Calmodulin-2 OS=Petunia hybrida GN=CAM72 PE=2 SV=2	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_120000-527 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_F05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF505034 ID=CF505034; Name=CF505034; organism=Citrus sinensis; type=EST; length=456bp
AAGGAGCTTGGCACTGTTATGAGGTCACTGGGTCAGAACCCCACTGAGGC
TGAGCTCCAGGACATGATCAATGAAGTGGATGCTGATGGCAATGGAACTA
TTGATTTTCCTGAATTCCTAAACCTCATGGCCAGGAAGATGAAGGATACC
GACTCTGAGGAGGAGCTGAAAGAGGCCTTCCGGGTTTTCGACAAGGATCA
GAATGGTTTCATCTCAGCTGCTGAGCTGCGCCATGTGATGACAAACCTAG
GAGAGAAACTTACTGATGAAGAAGTTGATGAGATGATAAGGGAAGCTGAT
GTTGATGGTGATGGCCAAATAAATTATGAGGAATTTGTCAAGGTTATGAT
GGCCAAGTAATGACCCCACCCACCAATACTTATAAAATGGGTTGACTAAA
TTATAAAGGGATTCCTAGTTTTCTCTTTTACAATTTTTAATTTGATAGTC
ATGAGG