CF505036 | Citrus Genome Database

Overview


Name	CF505036
Unique Name	CF505036
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	261

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CF505036 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 7.248e-12
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 1

Query:    1 IVESVGEGVSGLKPGDHVLPVLTAECREC 87
            +V  VGEGV+ +KPGDHV+P+ TAEC EC
Sbjct:   67 VVVEVGEGVTSVKPGDHVIPLYTAECGEC 95

HSP 2 Score: 41.5874 bits (96), Expect = 7.248e-12
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 3

Query:  102 CQSEESNTGDLLRINTERGIMTNDGQSRFSIKEKLIYNFLGTSTFGEYTVV 254
            C+S ++N    +R    +G+M  DG +RFS   + +Y+++G STF EYTVV
Sbjct:   98 CRSGKTNLCVAVRETQGKGLMP-DGTTRFSYNGQPLYHYMGCSTFSEYTVV 147

[Close]

BLAST of CF505036 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 7.248e-12
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 1

Query:    1 IVESVGEGVSGLKPGDHVLPVLTAECREC 87
            +V  VGEGV+ +KPGDHV+P+ TAEC EC
Sbjct:   67 VVVEVGEGVTSVKPGDHVIPLYTAECGEC 95

HSP 2 Score: 41.5874 bits (96), Expect = 7.248e-12
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 3

Query:  102 CQSEESNTGDLLRINTERGIMTNDGQSRFSIKEKLIYNFLGTSTFGEYTVV 254
            C+S ++N    +R    +G+M  DG +RFS   + +Y+++G STF EYTVV
Sbjct:   98 CRSGKTNLCVAVRETQGKGLMP-DGTTRFSYNGQPLYHYMGCSTFSEYTVV 147

[Close]

BLAST of CF505036 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 7.248e-12
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 1

Query:    1 IVESVGEGVSGLKPGDHVLPVLTAECREC 87
            +V  VGEGV+ +KPGDHV+P+ TAEC EC
Sbjct:   67 VVVEVGEGVTSVKPGDHVIPLYTAECGEC 95

HSP 2 Score: 41.5874 bits (96), Expect = 7.248e-12
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 3

Query:  102 CQSEESNTGDLLRINTERGIMTNDGQSRFSIKEKLIYNFLGTSTFGEYTVV 254
            C+S ++N    +R    +G+M  DG +RFS   + +Y+++G STF EYTVV
Sbjct:   98 CRSGKTNLCVAVRETQGKGLMP-DGTTRFSYNGQPLYHYMGCSTFSEYTVV 147

[Close]

BLAST of CF505036 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 7.248e-12
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 1

Query:    1 IVESVGEGVSGLKPGDHVLPVLTAECREC 87
            +V  VGEGV+ +KPGDHV+P+ TAEC EC
Sbjct:   67 VVVEVGEGVTSVKPGDHVIPLYTAECGEC 95

HSP 2 Score: 41.5874 bits (96), Expect = 7.248e-12
Identity = 21/51 (41.18%), Postives = 33/51 (64.71%), Query Frame = 3

Query:  102 CQSEESNTGDLLRINTERGIMTNDGQSRFSIKEKLIYNFLGTSTFGEYTVV 254
            C+S ++N    +R    +G+M  DG +RFS   + +Y+++G STF EYTVV
Sbjct:   98 CRSGKTNLCVAVRETQGKGLMP-DGTTRFSYNGQPLYHYMGCSTFSEYTVV 147

[Close]

BLAST of CF505036 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 47.7506 bits (112), Expect = 9.407e-12
Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 3

Query:   96 RHCQSEESNTGDLLRINTERGIMTNDGQSRFSIKEKLIYNFLGTSTFGEYTVV 254
            + C + ++N    +R+   +G+M  DG SRF+ K K I +++GTSTF EYTVV
Sbjct:  101 KFCLNPKTNLCQKIRVTQGKGLMP-DGTSRFTCKGKTILHYMGTSTFSEYTVV 152

HSP 2 Score: 41.2022 bits (95), Expect = 9.407e-12
Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = 1

Query:    1 IVESVGEGVSGLKPGDHVLPVLTAECREC 87
            IVESVGEGV+ LK GD V+P+   +C EC
Sbjct:   72 IVESVGEGVTNLKAGDTVIPLYIPQCGEC 100

[Close]

BLAST of CF505036 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 1.221e-11
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 3

Query:   96 RHCQSEESNTGDLLRINTERGIMTNDGQSRFSIKEKLIYNFLGTSTFGEYTVV 254
            + C+S ++N    +R    +G+M  DG SRF+ K K I +F+G STF +YTVV
Sbjct:  105 KFCKSGKTNLCGKIRATQGKGVMP-DGTSRFTCKGKEILHFMGCSTFSQYTVV 156

HSP 2 Score: 43.5134 bits (101), Expect = 1.221e-11
Identity = 18/29 (62.07%), Postives = 23/29 (79.31%), Query Frame = 1

Query:    1 IVESVGEGVSGLKPGDHVLPVLTAECREC 87
            IVES+GEGV+ +K GDHV+ + T EC EC
Sbjct:   76 IVESIGEGVTNVKVGDHVIALYTPECGEC 104

[Close]

BLAST of CF505036 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 48.1358 bits (113), Expect = 1.221e-11
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 3

Query:   96 RHCQSEESNTGDLLRINTERGIMTNDGQSRFSIKEKLIYNFLGTSTFGEYTVV 254
            + C + ++N    +R+   +G+M  DG SRF+ K K I +F+GTSTF EYTVV
Sbjct:  101 KFCLNPKTNLCQKIRVTQGKGLMP-DGTSRFTCKGKPILHFMGTSTFSEYTVV 152

HSP 2 Score: 40.4318 bits (93), Expect = 1.221e-11
Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = 1

Query:    1 IVESVGEGVSGLKPGDHVLPVLTAECREC 87
            IVESVGEGV+ LK GD V+P+   +C EC
Sbjct:   72 IVESVGEGVTKLKAGDTVIPLYIPQCGEC 100

[Close]

BLAST of CF505036 vs. ExPASy Swiss-Prot
Match: ADH1_RABIT (Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 45.0542 bits (105), Expect = 1.221e-11
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 3

Query:   96 RHCQSEESNTGDLLRINTERGIMTNDGQSRFSIKEKLIYNFLGTSTFGEYTVV 254
            R C+  ESN   +  +   +G++  DG SRF+ K K I++F+GTSTF +YTVV
Sbjct:  102 RICKHPESNFCLINDLGKPKGMLL-DGTSRFTCKGKPIHHFIGTSTFSQYTVV 153

HSP 2 Score: 43.5134 bits (101), Expect = 1.221e-11
Identity = 17/29 (58.62%), Postives = 24/29 (82.76%), Query Frame = 1

Query:    1 IVESVGEGVSGLKPGDHVLPVLTAECREC 87
            IVES+GEGV+ +KPGD V+P+ T +C +C
Sbjct:   73 IVESIGEGVTTVKPGDKVIPLFTPQCGKC 101

[Close]

BLAST of CF505036 vs. ExPASy Swiss-Prot
Match: ADHX_DICDI (Alcohol dehydrogenase class-3 OS=Dictyostelium discoideum GN=adh5 PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 1.585e-11
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 3

Query:   96 RHCQSEESNTGDLLRINTERGIMTNDGQSRFSIKEKLIYNFLGTSTFGEYTVV 254
            + C S ++N    +RI   +G M  DG +RF  K K I++F+GTSTF +YTV+
Sbjct:  103 KFCTSNKTNLCSKIRITQGKGQMP-DGTTRFKCKGKEIFHFMGTSTFSQYTVL 154

HSP 2 Score: 41.9726 bits (97), Expect = 1.585e-11
Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = 1

Query:    1 IVESVGEGVSGLKPGDHVLPVLTAECREC 87
            IVES+GEGV+ +K GDHV+P+   EC  C
Sbjct:   74 IVESIGEGVTSVKVGDHVIPLYIPECGTC 102

[Close]

BLAST of CF505036 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 47.7506 bits (112), Expect = 1.586e-11
Identity = 23/53 (43.40%), Postives = 35/53 (66.04%), Query Frame = 3

Query:   96 RHCQSEESNTGDLLRINTERGIMTNDGQSRFSIKEKLIYNFLGTSTFGEYTVV 254
            + C + ++N    +R+   +G+M  DG SRF+ K K I +++GTSTF EYTVV
Sbjct:  101 KFCLNPKTNLCQKIRVTQGKGLMP-DGTSRFTCKGKTILHYMGTSTFSEYTVV 152

HSP 2 Score: 40.4318 bits (93), Expect = 1.586e-11
Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = 1

Query:    1 IVESVGEGVSGLKPGDHVLPVLTAECREC 87
            IVESVGEGV+ LK GD V+P+   +C EC
Sbjct:   72 IVESVGEGVTKLKAGDTVIPLYIPQCGEC 100

The following BLAST results are available for this feature:

BLAST of CF505036 vs. ExPASy Swiss-Prot

BLAST of CF505036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69


Match Name	E-value	Identity	Description
FRMA_ECOK1	7.248e-12	65.52	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_ECOHS	7.248e-12	65.52	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_ECO57	7.248e-12	65.52	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_ECO24	7.248e-12	65.52	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
ADHX_RABIT	9.407e-12	43.40	Alcohol dehydrogenase class-3 OS=Oryctolagus cunic...	[more]
FADH_CANMA	1.221e-11	43.40	S-(hydroxymethyl)glutathione dehydrogenase OS=Cand...	[more]
ADHX_RAT	1.221e-11	45.28	Alcohol dehydrogenase class-3 OS=Rattus norvegicus...	[more]
ADH1_RABIT	1.221e-11	45.28	Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus G...	[more]
ADHX_DICDI	1.585e-11	43.40	Alcohol dehydrogenase class-3 OS=Dictyostelium dis...	[more]
ADHX_HUMAN	1.586e-11	43.40	Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_120000-529 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_F07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF505036 ID=CF505036; Name=CF505036; organism=Citrus sinensis; type=EST; length=261bp
ATTGTGGAGAGCGTTGGGGAAGGGGTATCTGGTCTCAAACCAGGAGACCA
TGTCCTTCCTGTGTTAACAGCAGAGTGCAGGGAGTGTTGCCAACTCGCCA
TTGTCAATCAGAAGAAAGCAACACGGGCGATCTTCTTAGAATCAATACCG
AGAGGGGAATTATGACCAATGATGGTCAGTCGAGGTTCTCAATCAAGGAG
AAGCTGATATACAATTTTCTTGGCACATCCACATTCGGTGAATACACAGT
CGTCCATGTTG