CF505039

Overview
NameCF505039
Unique NameCF505039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E13K_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.312e-12
Identity = 35/103 (33.98%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  104 PSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT---TPFLVPAMKN 403
            PS + V+ L  +  I +++ Y  D  +  AL  S+I +++  PN++L +A A+ S  + WVQ NI  ++P  K + +++GN+V   P N    + FL+ AMKN
Sbjct:   24 PSDQDVINLYNANGIRKLRIYYPDKNIFKALNGSNIEIILGVPNQDL-EALANSSIANGWVQDNIRSHFPYVKFKYISIGNKV--SPTNNDQYSEFLLQAMKN 123          

HSP 2 Score: 24.2534 bits (51), Expect = 4.312e-12
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:   67 VGINYGRVANNLP 105
            +G+ YG+ ANNLP
Sbjct:   12 IGVCYGKAANNLP 24          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E13G_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GI9 OS=Nicotiana tabacum GN=PR2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.593e-12
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 2
Query:  104 PSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT---TPFLVPAMKN 403
            PS + V+ L  +  I +++ Y+ D+ V  AL  S+I +++  P ++L ++  D S  + WVQ NI  ++P  K + +AVGNEV   P N     PF+ PAM+N
Sbjct:   44 PSDQDVINLYNANGIRKMRIYNPDTNVFNALRGSNIEIILDVPLQDL-QSLTDPSRANGWVQDNIINHFPDVKFKYIAVGNEV--SPGNNGQYAPFVAPAMQN 143          

HSP 2 Score: 23.0978 bits (48), Expect = 5.593e-12
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:   67 VGINYGRVANNLP 105
            +G+ YG+ ANNLP
Sbjct:   32 IGVCYGKHANNLP 44          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.963e-12
Identity = 40/100 (40.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:  104 PSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKN 403
            P   +VV L K+  I R++ YD + A L AL  S+I +++  PNE L   A  Q+  + WVQ N+ + Y   K + +AVGNEV     +   FLVPAM+N
Sbjct:   52 PPQAEVVALYKTNNIPRMRLYDPNPAALEALRGSNIKLLLGVPNENLQYIALSQANANAWVQNNV-RNYANVKFKYIAVGNEV-KPSDSFAQFLVPAMRN 149          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 38/105 (36.19%), Postives = 56/105 (53.33%), Query Frame = 2
Query:   89 LQTTYPSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKN 403
            L    P+P++VV L     I R++ Y     VL AL  S+I +++  PN+ L   A+ Q   + WVQ NI  Y    +   V+VGNEV  +  +   FLVPA++N
Sbjct:   41 LGNNLPTPQEVVALYNQANIRRMRIYGPSPEVLEALRGSNIELLLDIPNDNLRNLASSQDNANKWVQDNIKNYANNVRFRYVSVGNEVKPE-HSFAQFLVPALEN 144          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.997e-11
Identity = 40/103 (38.83%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  110 PEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPA---TKIEAVAVGNEVFADP--KNTTPFLVPAMKN 403
            P KVVELLKS  I +VK +D D  VL AL+ S+I V +   N  L    A     ++WV  N+++Y+      +IE VAVG E F         PF++ A  N
Sbjct:   40 PSKVVELLKSNGIVKVKLFDADPKVLRALSGSNIGVTIGIQNSMLKSLNASVKVAESWVHDNVTRYFNGGNRVRIEYVAVGEEPFLQSYGNQYKPFVIGAAMN 142          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E13B_WHEAT (Glucan endo-1,3-beta-glucosidase OS=Triticum aestivum GN=GLC1 PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 4.477e-11
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = 2
Query:  104 PSPEKVVELLKSQR-IDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTD---NWVQANISKYYPATKIEAVAVGNEV-FADPKNTTPFLVPAMK 400
            PSP  V   L ++  IDRVK +D +   ++A A + IS+ V+ PN  L   A   +  D   +W++AN+S Y PAT +  +  GNE+  +   N    L+PAM+
Sbjct:   38 PSPTSVATFLATKTTIDRVKLFDANPTFISAFAGTPISLAVSLPNSALPALADKATGLDAARSWIRANLSPYVPATNVTLLLAGNEILLSTDTNLILSLLPAMR 141          

HSP 2 Score: 23.483 bits (49), Expect = 4.477e-11
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 1
Query:   67 VGINYGRVANNLP 105
            +G+NYG  A+NLP
Sbjct:   26 IGVNYGANADNLP 38          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis GN=HGN1 PE=1 SV=2)

HSP 1 Score: 63.929 bits (154), Expect = 4.503e-11
Identity = 34/103 (33.01%), Postives = 58/103 (56.31%), Query Frame = 2
Query:  104 PSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT---TPFLVPAMKN 403
            P   +V+ L K   I R++ YD + AVL AL  S+I +++  PN +L ++  + S   +WVQ N+  ++ +     +AVGNE+    + T     F++PAM+N
Sbjct:   50 PPVSEVIALYKKSNITRMRIYDPNRAVLEALRGSNIELILGVPNSDL-QSLTNPSNAKSWVQKNVRGFWSSVLFRYIAVGNEISPVNRGTAWLAQFVLPAMRN 151          

HSP 2 Score: 22.7126 bits (47), Expect = 4.503e-11
Identity = 9/18 (50.00%), Postives = 11/18 (61.11%), Query Frame = 1
Query:   64 KVGINYGRVANNLPVAGE 117
            +VG+ YG   NNLP   E
Sbjct:   37 QVGVCYGMQGNNLPPVSE 54          
BLAST of CF505039 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.527e-11
Identity = 39/100 (39.00%), Postives = 53/100 (53.00%), Query Frame = 2
Query:  104 PSPEKVVELLKSQRIDRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKN 403
            P+   VV + K   I  ++ Y  + A L A+  + I+VVV  PN+ LS  AA  +   +WV++NI + YP      V VGNEV       T  LVPAMKN
Sbjct:   19 PAASTVVSMFKFNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLSNLAASPAAAASWVKSNI-QAYPKVSFRYVCVGNEVAG---GATRNLVPAMKN 114          

HSP 2 Score: 23.8682 bits (50), Expect = 4.527e-11
Identity = 9/15 (60.00%), Postives = 11/15 (73.33%), Query Frame = 1
Query:   67 VGINYGRVANNLPVA 111
            +G+ YG  ANNLP A
Sbjct:    7 IGVCYGMSANNLPAA 21          
The following BLAST results are available for this feature:
BLAST of CF505039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
E13K_TOBAC4.312e-1233.98Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13G_TOBAC5.593e-1235.92Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13B_PRUPE8.963e-1240.00Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]
E13A_SOYBN1.529e-1136.19Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]
E139_ARATH1.997e-1138.83Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]
E13B_WHEAT4.477e-1135.58Glucan endo-1,3-beta-glucosidase OS=Triticum aesti... [more]
E13B_HEVBR4.503e-1133.01Glucan endo-1,3-beta-glucosidase, basic vacuolar i... [more]
GUB2_HORVU4.527e-1139.00Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-532 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505039 ID=CF505039; Name=CF505039; organism=Citrus sinensis; type=EST; length=403bp
CTTGCTGCATTCTCTTCCTTCTTCTTCTTCTTTCTCGTAACCTTCGCTTT
TGCAGATACTGGCAAGGTAGGTATAAATTACGGCAGAGTTGCAAACAACT
TACCCGTCGCCGGAGAAAGTTGTGGAGCTGCTGAAATCTCAAAGAATCGA
CCGAGTTAAAACATACGACACTGACTCAGCCGTACTCGCTGCACTCGCGA
ACTCGGACATAAGCGTCGTCGTTGCGTTCCCCAATGAGGAACTCTCCAAG
GCCGCAGCTGACCAGTCATTTACTGACAACTGGGTCCAGGCCAATATCTC
CAAGTACTACCCGGCAACGAAGATCGAGGCCGTCGCAGTGGGCAACGAAG
TCTTCGCAGACCCGAAGAACACGACGCCGTTTCTCGTCCCCGCCATGAAG
AAC
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