CF505044

Overview
NameCF505044
Unique NameCF505044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.484e-37
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPK AF T+ +HPNINSNGSICLDIL+
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 90
[Close]
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.484e-37
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPK AF T+ +HPNINSNGSICLDIL+
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 90
[Close]
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.484e-37
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPK AF T+ +HPNINSNGSICLDIL+
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 90
[Close]
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.484e-37
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPK AF T+ +HPNINSNGSICLDIL+
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 90
[Close]
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UB2D2_HUMAN (Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.484e-37
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPK AF T+ +HPNINSNGSICLDIL+
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 90
[Close]
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UB2D2_BOVIN (Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.484e-37
Identity = 70/90 (77.78%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPK AF T+ +HPNINSNGSICLDIL+
Sbjct:    1 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR 90
[Close]
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.531e-37
Identity = 70/90 (77.78%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            MA KRI KEL DL +DPP+SCSAGPV ED+FHWQATIMGP DSPYAGGVF + IHFP DYPFKPPK  F T+ +HPNINSNGSICLDIL+
Sbjct:    1 MALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR 90
[Close]
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 4.317e-37
Identity = 69/90 (76.67%), Postives = 78/90 (86.67%), Query Frame = 1 
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            MA KRI +EL DL KDPP+SCSAGPV +D+FHWQATIMGP DSPYAGGVF ++IHFP DYPFKPPK  F T+ +HPNINSNGSICLDIL+
Sbjct:    1 MALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR 90
[Close]
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 7.364e-37
Identity = 69/90 (76.67%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            MA KRI KEL DL +DPP+SCSAGPV ED+FHWQATIMGP DSPY+GGVF + IHFP DYPFKPPK  F T+ +HPNINSNGSICLDIL+
Sbjct:    1 MAFKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILR 90
[Close]
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 9.617e-37
Identity = 69/90 (76.67%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:  178 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            MA KRI KEL DL +DPP  CSAGPV +DMFHWQATIMGP DSPY GGVF +TIHFP DYPFKPPK AF T+ +HPNINSN SICLDIL+
Sbjct:    1 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILR 90
The following BLAST results are available for this feature:
BLAST of CF505044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
UB2D2_XENLA1.484e-3777.78Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT1.484e-3777.78Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_PIG1.484e-3777.78Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UB2D2_MOUSE1.484e-3777.78Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]
UB2D2_HUMAN1.484e-3777.78Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens... [more]
UB2D2_BOVIN1.484e-3777.78Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus G... [more]
UBC1_MAGGR2.531e-3777.78Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UBC4_SCHPO4.317e-3776.67Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC1_COLGL7.364e-3776.67Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UB2D3_BOVIN9.617e-3776.67Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-537 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505044 ID=CF505044; Name=CF505044; organism=Citrus sinensis; type=EST; length=449bp
CAAAGGCAAGAGATTGTAGAGGAGAGAGGTCGGGACGGCCAGTAGCCGCC
GCAGATCTGCTCCGAAGCCGTTCCCCTTTCTCACTGCTATTGCCCTCCGA
TCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTTGTTGTGGCTT
TAACTTTTAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTATTTTGAA
GGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGTC
CGGTGGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCCCCT
GATAGTCCATATGCAGGAGGTGTATTTTTGGTTACCATTCATTTTCCTCC
AGATTATCCCTTCAAGCCCCCAAAGGGTGCTTTTAGGACCAAGGGCTTCC
ACCCAAACATCAACAGCAATGGAAGCATATGTCTTGATATCCTTAAAGA
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