CF505044

Overview
NameCF505044
Unique NameCF505044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.822e-19
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  172 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            S  A KR++++ K LQ DPP   S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP   F ++ FHPNI ++GSICLDIL+
Sbjct:    2 STPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ 93          
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.822e-19
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  172 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            S  A +R++++ K +Q DPP   SA PVA+++  W A I+GP D+P+  G F + +HF   YP KPP   F ++ FHPN+   G +CLDIL+
Sbjct:    2 STSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQ 93          
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.822e-19
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  172 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            S  A +R++++ K +Q DPP   SA PVA+++  W A I+GP D+P+  G F + +HF   YP KPP   F ++ FHPN+   G +CLDIL+
Sbjct:    2 STSARRRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQ 93          
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 3.108e-19
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  172 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            S  A +R++++ K +Q DPP   SA PV +++  W A I+GP D+P+  G F + +HF   YP KPP   F ++ FHPN+ + G +CLDIL+
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQ 93          
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.302e-19
Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  172 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            S  A +R++++ K +Q+DPP   SA PVA+++  W A I+GP ++P+  G F + + F   YP KPP   F ++ FHPN+ S+G +CLDIL+
Sbjct:    2 STTARRRLMRDFKRMQQDPPQGVSASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQ 93          
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.302e-19
Identity = 38/92 (41.30%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  172 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            S  A +R++++ K +Q DPP   SA P+ +++  W A I+GP D+P+  G F + + F   YP KPP+  F ++ FHPN+ +NG +CLDIL+
Sbjct:    2 STAARRRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQ 93          
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UBC2_SCHPO (Ubiquitin-conjugating enzyme E2 2 OS=Schizosaccharomyces pombe GN=rhp6 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 6.924e-19
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 1
Query:  172 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            S  A +R++++ K +Q+DPP   SA PV++++  W A I+GP D+P+  G F + + F   YP KPP   F +  FHPN+ +NG +CLDIL+
Sbjct:    2 STTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQ 93          
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.924e-19
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 1
Query:  184 SKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINS-NGSICLDILK 447
            +KRI+KE++ ++ DP    +   V+E D+ H + T +GPP +PY GG F+V I  P +YPFKPPK  F TK +HPNI+S  G+ICLDILK
Sbjct:    4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK 93          
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.924e-19
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  181 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            +S+R+ KE  DL++ P        V +++FHW  T +GP DS YAGG F  ++ FP DYPF+PP   F T+ +HPN +S G++CL ILK
Sbjct:    8 SSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILK 96          
BLAST of CF505044 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.543e-18
Identity = 41/92 (44.57%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  172 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKGAFRTKGFHPNINSNGSICLDILK 447
            S  A +R++++ K LQ+DPP   S  P   ++  W A I GP  +P+  G F +TI F  +YP KPP   F +K FHPN+ ++GSICLDIL+
Sbjct:    2 STPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQ 93          
The following BLAST results are available for this feature:
BLAST of CF505044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
UBC2_MEDSA1.822e-1946.74Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_EMENI1.822e-1943.48Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU1.822e-1943.48Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_NEUCR3.108e-1942.39Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_YARLI5.302e-1942.39Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC2_TRIHA5.302e-1941.30Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_SCHPO6.924e-1942.39Ubiquitin-conjugating enzyme E2 2 OS=Schizosacchar... [more]
UBC1_YEAST6.924e-1951.11Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC14_SCHPO6.924e-1946.07Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBE2A_MOUSE1.543e-1844.57Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_120000-537 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-25_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF505044 ID=CF505044; Name=CF505044; organism=Citrus sinensis; type=EST; length=449bp
CAAAGGCAAGAGATTGTAGAGGAGAGAGGTCGGGACGGCCAGTAGCCGCC
GCAGATCTGCTCCGAAGCCGTTCCCCTTTCTCACTGCTATTGCCCTCCGA
TCTCCTTCTTCGCCGCACAAGTGTTGCAGATCCTAGGTTTGTTGTGGCTT
TAACTTTTAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTATTTTGAA
GGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCTGGTC
CGGTGGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCCCCT
GATAGTCCATATGCAGGAGGTGTATTTTTGGTTACCATTCATTTTCCTCC
AGATTATCCCTTCAAGCCCCCAAAGGGTGCTTTTAGGACCAAGGGCTTCC
ACCCAAACATCAACAGCAATGGAAGCATATGTCTTGATATCCTTAAAGA
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