CF509533

Overview
NameCF509533
Unique NameCF509533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_STAEQ (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.757e-18
Identity = 53/132 (40.15%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRDE 399
            AF  K      V     GDG ++QG  +E +N A+ +  PAI V +NN+Y + T  ++  AA++ +       +PG++VDGMDALAV QA   A+E A+   GP ++E  TYRY  H+M+ D  + YRT DE
Sbjct:  157 AFGLKKRGKNAVAITYTGDGGSSQGDFYEGINFASAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAISVGIPGIQVDGMDALAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDE 288          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODBA_BACSU (2-oxoisovalerate dehydrogenase subunit alpha OS=Bacillus subtilis GN=bfmBAA PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.154e-17
Identity = 50/132 (37.88%), Postives = 73/132 (55.30%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTA--EWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            A A +  K +   F  +G+G++NQG   E  N AA+  LP I +CENN Y +     +  A ++ S    G  +PG+ V+G D L V QA K A+E A +  GP ++E  +YR   HS  D  S+YR R+E+
Sbjct:  136 ALAGRMEKKDIAAFVTFGEGSSNQGDFHEGANFAAVHKLPVIFMCENNKYAISVPYDKQVACENISDRAIGYGMPGVTVNGNDPLEVYQAVKEARERARRGEGPTLIETISYRLTPHSSDDDDSSYRGREEV 267          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODBA_THET2 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.254e-17
Identity = 47/132 (35.61%), Postives = 68/132 (51.52%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            A + K  +   V    +GDGA ++G  +  +N AA+   PA+ VCENN Y +         SP+   +     +PG  VDGMD LA     K A E A +  GP ++E+  YRY  HS +D  S YR ++E+
Sbjct:  157 AISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFVCENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEV 288          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_BACCE (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus cereus GN=pdhA PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 1.578e-16
Identity = 50/131 (38.17%), Postives = 73/131 (55.73%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRD 396
            A   K    ++V     GDG A+QG  +E +N A  +  PAI V +NN Y + T   +  AAK+ +       + G++VDGMD LAV  A  FA+E A+   GP ++E  T+RY  H+M+ D  + YRT+D
Sbjct:  158 ALGMKLRGKKSVAITYTGDGGASQGDFYEGMNFAGAFKAPAIFVVQNNRYAISTPVEKQSAAKTVAQKAVAAGIYGIQVDGMDPLAVYAATAFARERAVNGEGPTLIETLTFRYGPHTMAGDDPTRYRTKD 288          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ACOA_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoA PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 2.062e-16
Identity = 52/132 (39.39%), Postives = 67/132 (50.76%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR--GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            A A K+     V     GDGA+NQG   E+LN+AA+W+LP I V ENN Y   T+        SY  R  G  +PG+ VDG D  AV +A       A +  GP +LE    R++GH   D   TYR   E+
Sbjct:  138 ALAAKFRGKGEVGITFCGDGASNQGTFLESLNLAAVWNLPVIFVIENNGYAESTSRDYGTAVDSYVDRAAGFGIPGVTVDGTDFFAVHEAAGEVIRRAREGGGPSLLECKMVRFYGHFEGD-AQTYRAAGEL 268          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODBA_THET8 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 45/132 (34.09%), Postives = 67/132 (50.76%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            A + K  +   V    +GDGA ++G  +  +N AA+   PA+ + ENN Y +         SP+   +     +PG  VDGMD LA     K A E A +  GP ++E+  YRY  HS +D  S YR ++E+
Sbjct:  157 AISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEV 288          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_ACHLA (Pyruvate dehydrogenase E1 component subunit alpha (Fragment) OS=Acholeplasma laidlawii GN=pdhA PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.745e-15
Identity = 50/132 (37.88%), Postives = 73/132 (55.30%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDY--VPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRDE 399
            A A K  K   VT    GDG    G+ +E LN AA +  P + V +NN + + T   +A+ S +  ++G    +P ++VDG D LA+  A K A + A K +GP ++E  TYR   H+ S DP S YRT++E
Sbjct:  129 AMASKIRKTNEVTAFTIGDGGTAHGEFYEGLNFAASFKAPVVAVIQNNQWAISTPVRKASNSETLAQKGVAFGIPYIQVDGNDMLAMYVASKEAMDRARKGDGPTLIEAFTYRMGPHTTSDDPCSIYRTKEE 260          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODBA_DICDI (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.977e-15
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKRGDYVPGLK---VDGMDALAVKQACKFAKEHALKNG-PMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            ++AQK + ++  T   +G+GAA++G    A+N AA    P I  C NN + + T      K      RG    G+K   VDG D  AV    K A++ A++   P+++E  TYR   HS SD  S YRT +EI
Sbjct:  208 SYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNFAAALSTPTIFFCRNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTKLARKIAVEEQVPVLIEAMTYRVGHHSTSDDSSRYRTVEEI 340          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.632e-15
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT-------AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL-KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            A+A K +    V    +G+GAA++G      N AA  + P I  C NN Y + T        +  AA+ P Y      +  ++VDG D  AV  A K A+  A+ +N P ++E  TYR   HS SD  S YR+ DE+
Sbjct:  220 AYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEV 351          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.632e-15
Identity = 47/137 (34.31%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT-------AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL-KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            A+A K +    +    +G+GAA++G      N AA  + P I  C NN Y + T        +  AA+ P Y      +  ++VDG D  AV  A K A+  A+ +N P ++E  TYR   HS SD  S YR+ DE+
Sbjct:  217 AYAAKRANANRIVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY-----GIKSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEV 348          
The following BLAST results are available for this feature:
BLAST of CF509533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
ODPA_STAEQ3.757e-1840.15Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_BACSU4.154e-1737.882-oxoisovalerate dehydrogenase subunit alpha OS=Ba... [more]
ODBA_THET29.254e-1735.612-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODPA_BACCE1.578e-1638.17Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ACOA_RALEH2.062e-1639.39Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODBA_THET81.336e-1534.092-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODPA_ACHLA1.745e-1537.88Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_DICDI2.977e-1536.092-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_PANTR6.632e-1535.042-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MOUSE6.632e-1534.312-oxoisovalerate dehydrogenase subunit alpha, mito... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-041 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509533 ID=CF509533; Name=CF509533; organism=Citrus sinensis; type=EST; length=402bp
TCCCCCGGGCTGCAGGCTTTCGCGCAGAAGTACTCGAAGGATGAAACGGT
GACGTTTGCACTGTATGGAGACGGTGCAGCAAACCAGGGCCAGTTGTTCG
AGGCTCTCAATATAGCAGCGCTTTGGGATCTGCCGGCGATTTTGGTCTGC
GAGAATAATCACTATGGAATGGGGACAGCTGAGTGGAGAGCGGCAAAGAG
TCCCTCATACTACAAGCGTGGGGATTATGTTCCCGGTTTGAAGGTGGATG
GCATGGATGCCCTTGCTGTCAAACAAGCATGCAAGTTTGCTAAGGAGCAT
GCCTTAAAGAATGGACCTATGATACTTGAAATGGACACATACAGGTATCA
TGGTCACTCCATGTCTGACCCTGGAAGCACCTACCGTACTCGTGATGAGA
TC
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