CF509533

Overview
NameCF509533
Unique NameCF509533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.632e-15
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT-------AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL-KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            A+A K +    V    +G+GAA++G      N AA  + P I  C NN Y + T        +  AA+ P Y      +  ++VDG D  AV  A K A+  A+ +N P ++E  TYR   HS SD  S YR+ DE+
Sbjct:  220 AYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEV 351          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODBA_HUMAN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 6.632e-15
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT-------AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL-KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            A+A K +    V    +G+GAA++G      N AA  + P I  C NN Y + T        +  AA+ P Y      +  ++VDG D  AV  A K A+  A+ +N P ++E  TYR   HS SD  S YR+ DE+
Sbjct:  220 AYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEV 351          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODBA_RAT (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.661e-15
Identity = 47/137 (34.31%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT-------AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL-KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            A+A K +    +    +G+GAA++G      N AA  + P I  C NN Y + T        +  AA+ P Y      +  ++VDG D  AV  A K A+  A+ +N P ++E  TYR   HS SD  S YR+ DE+
Sbjct:  216 AYAAKRANANQIVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY-----GIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEV 347          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODBA_BOVIN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.661e-15
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT-------AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHAL-KNGPMILEMDTYRYHGHSMSDPGSTYRTRDEI 402
            A+A K +    V    +G+GAA++G      N AA  + P I  C NN Y + T        +  AA+ P Y      +  ++VDG D  AV  A K A+  A+ +N P ++E  TYR   HS SD  S YR+ DE+
Sbjct:  230 AYAAKRANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGY-----GILSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEV 361          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_BACST (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus stearothermophilus GN=pdhA PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.930e-14
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRD 396
            A   K    + V     GDG  +QG  +E +N A  +  PAI V +NN + + T   +   AK+ +       +PG++VDGMD LAV  A K A+E A+   GP ++E   +RY  H+MS D  + YR+++
Sbjct:  156 ALGLKMRGKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKE 286          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_BACSU (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus subtilis GN=pdhA PE=1 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 3.291e-14
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 1
Query:   16 AFAQKYSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT--AEWRAAKSPSYYKRGDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMS-DPGSTYRTRD 396
            A   K    + V     GDG A+QG  +E +N A  +  PAI V +NN Y + T   +  AA++ +       + G++VDGMD LAV  A   A+E A+   GP ++E  T+RY  H+M+ D  + YRT++
Sbjct:  158 ALGLKKRGKKAVAITYTGDGGASQGDFYEGINFAGAYKAPAIFVVQNNRYAISTPVEKQSAAETIAQKAVAAGIVGVQVDGMDPLAVYAATAEARERAINGEGPTLIETLTFRYGPHTMAGDDPTKYRTKE 288          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_MYCGE (Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma genitalium GN=pdhA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 1
Query:   31 YSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT-AEWRAAKSPSYYKR-GDYVPGLKVDGMDALAVKQACKFAKEHAL-KNGPMILEMDTYRYHGHSMSDPGSTYRTRDE 399
            Y K   V   + GDG   +G+ +EA+NIA++     +    NN + + T  +  +A S    K     +P ++VDG D +A  +A + A  +A   NGP+++E  +YR   H+ SD  S YRT+ E
Sbjct:  151 YKKQPNVAVTMIGDGGTAEGEFYEAMNIASIHKWNTVFCINNNQFAISTRTKLESAVSDLSVKAIACGIPRVRVDGNDLIASYEAMQDAANYARGGNGPVLIEFFSYRQGPHTTSDDPSIYRTKQE 276          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODPA_MYCPN (Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma pneumoniae GN=pdhA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.810e-11
Identity = 40/126 (31.75%), Postives = 67/126 (53.17%), Query Frame = 1
Query:   31 YSKDETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGT-AEWRAAKSPSYYKR-GDYVPGLKVDGMDALAVKQACKFAKEHALK-NGPMILEMDTYRYHGHSMSDPGSTYRTRDE 399
            Y K   V   + GDG   +G+ +EA+NIA++    ++    NN + + T  +  +A S    K     +P ++VDG D +A  +A   A  +A   NGP+++E  ++R   H+ SD  S YRT++E
Sbjct:  151 YKKLPNVAVTMIGDGGTAEGEFYEAMNIASIHKWNSVFCINNNQFAISTRTKLESAVSDLSTKAIAVNIPRIRVDGNDLIASYEAMHEAANYARSGNGPVLIEFFSWRQGPHTTSDDPSIYRTKEE 276          
BLAST of CF509533 vs. ExPASy Swiss-Prot
Match: ODBA_PSEAE (2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas aeruginosa GN=bkdA1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.588e-11
Identity = 44/124 (35.48%), Postives = 61/124 (49.19%), Query Frame = 1
Query:   40 DETVTFALYGDGAANQGQLFEALNIAALWDLPAILVCENNHYGMGTAEWRAAKSPSYYKR---GDYVPGLKVDGMDALAVKQACKFAKEHALKN-GPMILEMDTYRYHGHSMSDPGSTYRTRDE 399
            D  +  A  GDGA  +     AL  A ++  P IL   NN + + T +  A    + +     G  +  L+VDG D LAV  A ++A E A +N GP ++E  TYR   HS SD  S YR  D+
Sbjct:  203 DTRIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGEGTTFANRGVGCGIASLRVDGNDFLAVYAASEWAAERARRNLGPSLIEWVTYRAGPHSTSDDPSKYRPADD 326          
The following BLAST results are available for this feature:
BLAST of CF509533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
ODBA_MACFA6.632e-1535.042-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_HUMAN6.632e-1535.042-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_RAT8.661e-1534.312-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_BOVIN8.661e-1535.042-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODPA_BACST1.930e-1435.11Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_BACSU3.291e-1435.88Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_MYCGE1.529e-1132.54Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_MYCPN5.810e-1131.75Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODBA_PSEAE7.588e-1135.482-oxoisovalerate dehydrogenase subunit alpha OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-041 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509533 ID=CF509533; Name=CF509533; organism=Citrus sinensis; type=EST; length=402bp
TCCCCCGGGCTGCAGGCTTTCGCGCAGAAGTACTCGAAGGATGAAACGGT
GACGTTTGCACTGTATGGAGACGGTGCAGCAAACCAGGGCCAGTTGTTCG
AGGCTCTCAATATAGCAGCGCTTTGGGATCTGCCGGCGATTTTGGTCTGC
GAGAATAATCACTATGGAATGGGGACAGCTGAGTGGAGAGCGGCAAAGAG
TCCCTCATACTACAAGCGTGGGGATTATGTTCCCGGTTTGAAGGTGGATG
GCATGGATGCCCTTGCTGTCAAACAAGCATGCAAGTTTGCTAAGGAGCAT
GCCTTAAAGAATGGACCTATGATACTTGAAATGGACACATACAGGTATCA
TGGTCACTCCATGTCTGACCCTGGAAGCACCTACCGTACTCGTGATGAGA
TC
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