CF509536

Overview
NameCF509536
Unique NameCF509536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length410
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.544e-30
Identity = 70/114 (61.40%), Postives = 75/114 (65.79%), Query Frame = 2
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH 403
            MAGRGK                  LQFPVGRIAR+LK GKYAER+GAGAP                  GNAARDNKK RIVPRHIQLA+RNDEEL KLLGDVTIA+GGV+PNIH
Sbjct:    1 MAGRGK--GKTAGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIH 112          
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.613e-29
Identity = 69/114 (60.53%), Postives = 75/114 (65.79%), Query Frame = 2
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH 403
            MAGRGK                  LQFPVGRIAR+LK GKYAER+GAGAP                  GNAARDNKK RIVPRHIQLA+RNDEEL KLLG+VTIA+GGV+PNIH
Sbjct:    1 MAGRGK--GKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIH 112          
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.107e-29
Identity = 66/90 (73.33%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  134 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH 403
            LQFPVGRIAR+LKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNIH
Sbjct:   27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIH 116          
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.107e-29
Identity = 66/90 (73.33%), Postives = 69/90 (76.67%), Query Frame = 2
Query:  134 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH 403
            LQFPVGRIAR+LKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNIH
Sbjct:   27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIH 116          
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.046e-28
Identity = 65/92 (70.65%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  134 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409
            LQFPVGRIAR+LKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNI  +
Sbjct:   27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQV 118          
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.046e-28
Identity = 65/92 (70.65%), Postives = 69/92 (75.00%), Query Frame = 2
Query:  134 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409
            LQFPVGRIAR+LKAGKYAERVGAGAP                  GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNI  +
Sbjct:   27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQV 118          
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.363e-27
Identity = 60/92 (65.22%), Postives = 67/92 (72.83%), Query Frame = 2
Query:  134 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409
            LQFPVGRI R+LK GKYA+RVGAGAP                  GNAARDNKK+RI PRHIQLAVRNDEEL+K L  VT A+GGV+PNIHN+
Sbjct:   24 LQFPVGRIGRYLKKGKYAKRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNV 115          
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 5.737e-27
Identity = 65/113 (57.52%), Postives = 72/113 (63.72%), Query Frame = 2
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNI 400
            M+GRGKT                 LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI
Sbjct:    1 MSGRGKT-GGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNI 112          
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 5.737e-27
Identity = 65/113 (57.52%), Postives = 72/113 (63.72%), Query Frame = 2
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNI 400
            M+GRGKT                 LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI
Sbjct:    1 MSGRGKT-GGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNI 112          
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 9.786e-27
Identity = 64/113 (56.64%), Postives = 72/113 (63.72%), Query Frame = 2
Query:   62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNI 400
            M+GRGKT                 LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI
Sbjct:    1 MSGRGKT-GGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNI 112          
The following BLAST results are available for this feature:
BLAST of CF509536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 233
Match NameE-valueIdentityDescription
H2A3_VOLCA5.544e-3061.40Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]
H2A_CHLRE1.613e-2960.53Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]
H2AXB_ORYSJ2.107e-2973.33Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI2.107e-2973.33Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AXA_ORYSJ1.046e-2870.65Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI1.046e-2870.65Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A_PLAFA3.363e-2765.22Histone H2A OS=Plasmodium falciparum PE=2 SV=1[more]
H2A_ONCMY5.737e-2757.52Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2[more]
H2AX_DANRE5.737e-2757.52Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3[more]
H2AX_MOUSE9.786e-2756.64Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-044 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509536 ID=CF509536; Name=CF509536; organism=Citrus sinensis; type=EST; length=410bp
CAAGTCTCAACCTTTTGCTCTTTCCATTTTCCTTTCTTCGTTAAGAGCTT
ATTCACTTGAGATGGCGGGTCGGGGCAAGACTCTCGGGTCCGGGGCGGCG
AAGAAGGCCACCTCACGTAGCAGCAAAGCGGGGCTTCAATTTCCCGTCGG
TCGTATTGCCAGGTTCCTGAAAGCCGGGAAATATGCTGAACGGGTCGGTG
CCGGAGCCCCGGTTTATCTCGCCGCCGTCCTTGAATATCTCGCCGCTGAG
GTTTTGGAATTAGCTGGAAATGCTGCAAGGGACAACAAGAAAACACGAAT
TGTCCCTCGCCACATCCAATTGGCTGTCAGGAATGATGAGGAGCTCAGCA
AGCTTCTTGGGGATGTTACCATTGCTAACGGTGGTGTGATGCCCAACATC
CACAACCTTC
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