CF509536
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 5.544e-30 Identity = 70/114 (61.40%), Postives = 75/114 (65.79%), Query Frame = 2 Query: 62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH 403 MAGRGK LQFPVGRIAR+LK GKYAER+GAGAP GNAARDNKK RIVPRHIQLA+RNDEEL KLLGDVTIA+GGV+PNIH Sbjct: 1 MAGRGK--GKTAGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIH 112
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 1.613e-29 Identity = 69/114 (60.53%), Postives = 75/114 (65.79%), Query Frame = 2 Query: 62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH 403 MAGRGK LQFPVGRIAR+LK GKYAER+GAGAP GNAARDNKK RIVPRHIQLA+RNDEEL KLLG+VTIA+GGV+PNIH Sbjct: 1 MAGRGK--GKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIH 112
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 2.107e-29 Identity = 66/90 (73.33%), Postives = 69/90 (76.67%), Query Frame = 2 Query: 134 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH 403 LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNIH Sbjct: 27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIH 116
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 2.107e-29 Identity = 66/90 (73.33%), Postives = 69/90 (76.67%), Query Frame = 2 Query: 134 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIH 403 LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNIH Sbjct: 27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIH 116
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.046e-28 Identity = 65/92 (70.65%), Postives = 69/92 (75.00%), Query Frame = 2 Query: 134 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409 LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNI + Sbjct: 27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQV 118
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.046e-28 Identity = 65/92 (70.65%), Postives = 69/92 (75.00%), Query Frame = 2 Query: 134 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409 LQFPVGRIAR+LKAGKYAERVGAGAP GNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA GGV+PNI + Sbjct: 27 LQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQV 118
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 3.363e-27 Identity = 60/92 (65.22%), Postives = 67/92 (72.83%), Query Frame = 2 Query: 134 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNL 409 LQFPVGRI R+LK GKYA+RVGAGAP GNAARDNKK+RI PRHIQLAVRNDEEL+K L VT A+GGV+PNIHN+ Sbjct: 24 LQFPVGRIGRYLKKGKYAKRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNV 115
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2A_ONCMY (Histone H2A OS=Oncorhynchus mykiss PE=1 SV=2) HSP 1 Score: 119.398 bits (298), Expect = 5.737e-27 Identity = 65/113 (57.52%), Postives = 72/113 (63.72%), Query Frame = 2 Query: 62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNI 400 M+GRGKT LQFPVGR+ R L+ G YAERVGAGAP GNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI Sbjct: 1 MSGRGKT-GGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNI 112
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2AX_DANRE (Histone H2A.x OS=Danio rerio GN=h2afx PE=2 SV=3) HSP 1 Score: 119.398 bits (298), Expect = 5.737e-27 Identity = 65/113 (57.52%), Postives = 72/113 (63.72%), Query Frame = 2 Query: 62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNI 400 M+GRGKT LQFPVGR+ R L+ G YAERVGAGAP GNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI Sbjct: 1 MSGRGKT-GGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNI 112
BLAST of CF509536 vs. ExPASy Swiss-Prot
Match: H2AX_MOUSE (Histone H2A.x OS=Mus musculus GN=H2afx PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 9.786e-27 Identity = 64/113 (56.64%), Postives = 72/113 (63.72%), Query Frame = 2 Query: 62 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNI 400 M+GRGKT LQFPVGR+ R L+ G YAERVGAGAP GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI Sbjct: 1 MSGRGKT-GGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNI 112 The following BLAST results are available for this feature:
BLAST of CF509536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 233
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF509536 ID=CF509536; Name=CF509536; organism=Citrus sinensis; type=EST; length=410bpback to top |