CF509563

Overview
NameCF509563
Unique NameCF509563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.888e-15
Identity = 45/99 (45.45%), Postives = 66/99 (66.67%), Query Frame = 3
Query:   72 TLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 368
            T TV EA+ +SA+ +LP  M   +K +  E  I+ + L    N +IG  G +GLS  Q++RV+I +E+ + P+LLFLDEPTSGLDS+A+  VM+ I K+
Sbjct:  808 TQTVKEAILFSAKTRLPSDMPNEEKIKFVENIIETLNLLKIQNKQIGH-GEEGLSLSQRKRVNIGVELASDPQLLFLDEPTSGLDSSAALKVMNLIKKI 905          

HSP 2 Score: 68.5514 bits (166), Expect = 1.171e-11
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 3
Query:   48 HKMTPLITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 368
            H M P     TV E   +SA LQ+ +  ++ +K  R +  +K + L    +T +G    +G+SGGQK+RV+I +EM+    L  +DEP++GLDS  +  +M    +L
Sbjct:  141 HHMAPF----TVRETFKFSADLQMSEGTSEEEKNARVDYILKTLDLTRQQDTVVGNEFLRGVSGGQKKRVTIGVEMVKDAGLFLMDEPSTGLDSTTTLELMKHFREL 243          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB3G_ARATH (ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.888e-15
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 3
Query:   57 TPLITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWG-AKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 368
            T LI +LTV E +YYSA LQLP  +   QK+   E  I+ M L D  N  IGG    KGL  G++RRVSI  E++ RP +LF+DEP   LDS ++  +M  + KL
Sbjct:  199 TQLIGSLTVREFLYYSALLQLPGFL--FQKRSVVEDAIQAMSLSDYANKLIGGHCYMKGLRSGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKL 301          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB24G_ARATH (ABC transporter G family member 24 OS=Arabidopsis thaliana GN=ABCG24 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.078e-15
Identity = 39/92 (42.39%), Postives = 62/92 (67.39%), Query Frame = 3
Query:   75 LTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVM 350
            LTV E +++ A+ +LP  ++K  K    E  I  +GLQ   ++ +G    +G+SGGQ++RV++ +EM+  P +LFLDEPTSGLDSA+S  ++
Sbjct:  566 LTVEENLWFHAKCRLPADLSKADKVLVVERIIDSLGLQAVRSSLVGTVEKRGISGGQRKRVNVGLEMVMEPSVLFLDEPTSGLDSASSQLLL 657          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.477e-14
Identity = 38/95 (40.00%), Postives = 62/95 (65.26%), Query Frame = 3
Query:   75 LTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRI 359
            +TV E++++SA L+LP  +TK QKKE  E  ++ + L       +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +
Sbjct:  926 VTVEESLWFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1020          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB7G_ARATH (ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.930e-14
Identity = 37/105 (35.24%), Postives = 65/105 (61.90%), Query Frame = 3
Query:   75 LTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGV 389
            LTV E + ++A+LQLP+  +  ++ E     + ++GL    ++ +G    +G+SGG+K+R+S+  E++  P ++F DEPT+GLD+  +  VM  + KL Q  H V
Sbjct:  164 LTVRETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSLACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTV 268          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: WBC30_ARATH (Putative white-brown complex homolog protein 30 OS=Arabidopsis thaliana GN=WBC30 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.520e-14
Identity = 39/97 (40.21%), Postives = 63/97 (64.95%), Query Frame = 3
Query:   75 LTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAK 365
            LTV E + +SA+ +L   M+K  K    E  I+ +GLQ   ++ +G    +G+SGGQ++RV++ +EM+  P LL LDEPT+GLDSA+S  ++  + +
Sbjct:  554 LTVEENLRFSARCRLSAYMSKADKVLIIERVIESLGLQHVRDSLVGTIEKRGISGGQRKRVNVGVEMVMEPSLLILDEPTTGLDSASSQLLLRALRR 650          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: ABCG7_DICDI (ABC transporter G family member 7 OS=Dictyostelium discoideum GN=abcG7 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.520e-14
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 3
Query:   63 LITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGG-----WGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 368
            L+ T TV E + + A L+LP  ++   K +  E  IK++GL     ++IGG        KGLSGG+K+RVSI   ++T P LLFLDEPTSGLDS  +  VM  +  L
Sbjct:  324 LLQTSTVEETLKFHADLRLPG-LSDQDKWKVVEQVIKDIGLTKKSKSKIGGILPGGMIVKGLSGGEKKRVSIGCALVTNPSLLFLDEPTSGLDSLNALKVMKVLMNL 429          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: WHITE_DROME (Protein white OS=Drosophila melanogaster GN=w PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.291e-14
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 3
Query:   66 ITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWG-AKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 377
            I +LT  E + + A +++P  +T  Q+  R +  I+E+ L    +T IG  G  KGLSGG+++R++   E LT P LL  DEPTSGLDS  ++ V+  + KL Q+
Sbjct:  185 IGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQK 289          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB23G_ARATH (ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.291e-14
Identity = 42/104 (40.38%), Postives = 66/104 (63.46%), Query Frame = 3
Query:   63 LITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGA--KGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 368
            L+  LTV E + YSA+  L D+  K +++ER E  + ++GL    ++ +G      +G+SGG+++RVSI +EM+  P +L LDEPTSGLDS  S  V+  +A +
Sbjct:  138 LLPLLTVKETLMYSAKFSLRDSTAK-EREERVESLLSDLGLVLVQDSFVGEGDEEDRGVSGGERKRVSIAVEMIRDPPILLLDEPTSGLDSRNSLQVVELLATM 240          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB5G_ARATH (ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.299e-14
Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   63 LITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRI 359
            L   LTV E + +SA+L+L     +L  + R +  + E+GL+     R+G    +G+SGG++RRVSI +E++  PK+L LDEPTSGLDS ++  ++  +
Sbjct:  129 LFPLLTVEETLLFSAKLRLKLPADEL--RSRVKSLVHELGLEAVATARVGDDSVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSTSALLIIDML 225          
The following BLAST results are available for this feature:
BLAST of CF509563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
ABCG2_DICDI3.888e-1545.45ABC transporter G family member 2 OS=Dictyostelium... [more]
AB3G_ARATH3.888e-1546.67ABC transporter G family member 3 OS=Arabidopsis t... [more]
AB24G_ARATH5.078e-1542.39ABC transporter G family member 24 OS=Arabidopsis ... [more]
AB31G_ARATH1.477e-1440.00ABC transporter G family member 31 OS=Arabidopsis ... [more]
AB7G_ARATH1.930e-1435.24ABC transporter G family member 7 OS=Arabidopsis t... [more]
WBC30_ARATH2.520e-1440.21Putative white-brown complex homolog protein 30 OS... [more]
ABCG7_DICDI2.520e-1443.93ABC transporter G family member 7 OS=Dictyostelium... [more]
WHITE_DROME3.291e-1440.00Protein white OS=Drosophila melanogaster GN=w PE=1... [more]
AB23G_ARATH3.291e-1440.38ABC transporter G family member 23 OS=Arabidopsis ... [more]
AB5G_ARATH4.299e-1439.39ABC transporter G family member 5 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-071 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509563 ID=CF509563; Name=CF509563; organism=Citrus sinensis; type=EST; length=404bp
TAATGGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACAC
AAGATGACGCCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTA
CTCAGCTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAG
AAAGAGCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAAT
ACAAGAATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAG
GAGAGTTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTC
TTGACGAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATG
AGCAGGATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAAC
AATA
back to top