CF509563

Overview
NameCF509563
Unique NameCF509563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: ABCG1_MOUSE (ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.081e-12
Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 3
Query:   63 LITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 374
            L+  LTV EA+  SA L+L +      ++E  +  +  +GL    NTR G      LSGGQ++R++I +E++  P ++F DEPTSGLDSA+ + V+S +  L Q
Sbjct:  168 LLPHLTVQEAMMVSAHLKLQEKDEG--RREMVKEILTALGLLPCANTRTGS-----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQ 264          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: SNQ2_YEAST (Protein SNQ2 OS=Saccharomyces cerevisiae GN=SNQ2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.023e-12
Identity = 37/109 (33.94%), Postives = 68/109 (62.39%), Query Frame = 3
Query:   66 ITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLDQRDHGV 389
            I  LTV E++ +SA+++ P  +   +K +  E  I+ +G+++     +G  G  GL+  Q++++SI +E++ +P LL FLDEPTSGLDS +S+ ++  + KL +    +
Sbjct:  939 IAELTVRESLQFSARMRRPQHLPDSEKMDYVEKIIRVLGMEEYAEALVGEVGC-GLNVEQRKKLSIGVELVAKPDLLLFLDEPTSGLDSQSSWAIIQLLRKLSKAGQSI 1046          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.023e-12
Identity = 34/95 (35.79%), Postives = 60/95 (63.16%), Query Frame = 3
Query:   75 LTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRI 359
            +TV E++ YSA L+LP  +    K E  +  ++ + L D  ++ +G  G  GLS  Q++R++I +E++  P ++F+DEPT+GLD+ A+  VM  +
Sbjct:  900 ITVEESLKYSAWLRLPYNIDSKTKNELVKEVLETVELDDIKDSVVGLPGISGLSIEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 994          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: ABCG4_HUMAN (ATP-binding cassette sub-family G member 4 OS=Homo sapiens GN=ABCG4 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.255e-12
Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 3
Query:   63 LITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTI 404
            L+  LTV EA+  SA L+L +      KKE     +  +GL    +TR        LSGGQ++R++I +E++  P ++F DEPTSGLDSA+ + V+S +  L Q     G RTI
Sbjct:  152 LLPHLTVLEAMMVSANLKLSEKQEV--KKELVTEILTALGLMSCSHTRTAL-----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQ-----GGRTI 253          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: BROWN_DROVI (Protein brown OS=Drosophila virilis GN=bw PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.863e-12
Identity = 36/104 (34.62%), Postives = 63/104 (60.58%), Query Frame = 3
Query:   66 ITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 377
            + T T  + +Y+ +  ++    TK +K++     +  +GL+DA +TRI     + LSGG+++R+S+  E++T P  LF DEPT+GLDS ++Y V+  +  L  R
Sbjct:  114 VKTFTAYDDLYFMSHFKMHRRTTKSEKRQAVSDLLLAVGLRDAAHTRI-----QQLSGGERKRLSLAEELITDPIFLFCDEPTTGLDSFSAYTVIKTLRHLCTR 212          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: ABCG5_RAT (ATP-binding cassette sub-family G member 5 OS=Rattus norvegicus GN=Abcg5 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 6.863e-12
Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 3
Query:   66 ITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRD 380
            +++LTV E + Y+A L L  +      K + E  + E+ L    +  IG +   G+S G++RRVSI  ++L  PK++ LDEPT+GLD   + +++  + +L +R+
Sbjct:  140 LSSLTVRETLRYTAMLALRSSSADFYDK-KVEAVLTELSLSHVADQMIGNYNFGGISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANHIVLLLVELARRN 243          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: WHT3_CAEEL (ABC transporter ATP-binding protein/permease wht-3 OS=Caenorhabditis elegans GN=wht-3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.963e-12
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 3
Query:   66 ITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWG-AKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 368
            I TLTV E +   A+L++     K  ++ER +  I+ + LQ+  + +IG  G  KG+SGG+ RR++   E+L+ P LLF DEPTSGLDS  +  V+  +  L
Sbjct:  126 IPTLTVDEYLMIQARLRMK--ANKHTRRERVDEIIEMLRLQNCRDLKIGTPGLVKGISGGEARRLTFACELLSNPSLLFADEPTSGLDSFMAASVVQILKNL 225          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: ABCGG_DICDI (ABC transporter G family member 16 OS=Dictyostelium discoideum GN=abcG16 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.963e-12
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 3
Query:   78 TVSEAVYYSAQLQLP-DTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 368
            TV EA+ +SA L+LP DTMT   K +  +  +  + L    NT IG     G++  Q++RV+I IEM + P +LFLDEPT+GL S A+  +M  I ++
Sbjct:  933 TVREAITFSALLRLPNDTMTHQDKLDTVDYILDVLELNSIANTLIGKVD-HGITQEQRKRVNIAIEMASLPDILFLDEPTTGLTSVAAELIMQLIKRV 1029          

HSP 2 Score: 66.2402 bits (160), Expect = 5.810e-11
Identity = 30/103 (29.13%), Postives = 64/103 (62.14%), Query Frame = 3
Query:   66 ITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQ 374
            I+TLTV E + +S + Q    +++  KK+ +   +  +G+    +T IG    +G+SGGQK+R+++ +E++   K + +D+ T+GLDS +++ +++ I  + +
Sbjct:  258 ISTLTVKETLEFSIECQ--SNLSREAKKQLSSNILSILGISHVADTYIGNQSIRGISGGQKKRMTVAVELVKGAKAIMIDQATNGLDSTSAFELLNSIQMISK 358          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: SCRT_DROME (Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.171e-11
Identity = 37/103 (35.92%), Postives = 66/103 (64.08%), Query Frame = 3
Query:   72 TLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIG-GWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQR 377
            +LTV E + + A L+L   ++K +++   +  ++  GL  A  TRIG G   K LSGG+++R++  +E+L  P +LF DEPT+GLDS ++  +++ + +L Q+
Sbjct:  162 SLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQK 264          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: ABCGA_DICDI (ABC transporter G family member 10 OS=Dictyostelium discoideum GN=abcG10 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.171e-11
Identity = 39/99 (39.39%), Postives = 63/99 (63.64%), Query Frame = 3
Query:   75 LTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAK-GLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 368
            LTV EA+ +SA+L+   T++   K E  E  ++ M ++   +  IG      G+S  +++R++I IE++ +P +LFLDEPTSGLDS +SY ++  I KL
Sbjct:  928 LTVREALRFSAKLRQEPTVSLQDKYEYVEQVLEMMEMKHLGDALIGSLETGIGISVEERKRLTIGIELVAKPHILFLDEPTSGLDSQSSYNIVKFIRKL 1026          
The following BLAST results are available for this feature:
BLAST of CF509563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
ABCG1_MOUSE3.081e-1239.42ATP-binding cassette sub-family G member 1 OS=Mus ... [more]
SNQ2_YEAST4.023e-1233.94Protein SNQ2 OS=Saccharomyces cerevisiae GN=SNQ2 P... [more]
AB30G_ARATH4.023e-1235.79ABC transporter G family member 30 OS=Arabidopsis ... [more]
ABCG4_HUMAN5.255e-1239.47ATP-binding cassette sub-family G member 4 OS=Homo... [more]
BROWN_DROVI6.863e-1234.62Protein brown OS=Drosophila virilis GN=bw PE=2 SV=... [more]
ABCG5_RAT6.863e-1233.33ATP-binding cassette sub-family G member 5 OS=Ratt... [more]
WHT3_CAEEL8.963e-1240.20ABC transporter ATP-binding protein/permease wht-3... [more]
ABCGG_DICDI8.963e-1241.84ABC transporter G family member 16 OS=Dictyosteliu... [more]
SCRT_DROME1.171e-1135.92Protein scarlet OS=Drosophila melanogaster GN=st P... [more]
ABCGA_DICDI1.171e-1139.39ABC transporter G family member 10 OS=Dictyosteliu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-071 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509563 ID=CF509563; Name=CF509563; organism=Citrus sinensis; type=EST; length=404bp
TAATGGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACAC
AAGATGACGCCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTA
CTCAGCTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAG
AAAGAGCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAAT
ACAAGAATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAG
GAGAGTTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTC
TTGACGAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATG
AGCAGGATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAAC
AATA
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