CF509563

Overview
NameCF509563
Unique NameCF509563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.171e-11
Identity = 32/95 (33.68%), Postives = 59/95 (62.11%), Query Frame = 3
Query:   75 LTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRI 359
            +TV E+V YSA L+L   +    K +  +  ++ + L +  ++ +G  G  GLS  Q++R++I +E++  P ++F+DEPT+GLD+ A+  VM  +
Sbjct:  950 ITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAV 1044          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: CDR4_CANAL (ABC transporter CDR4 OS=Candida albicans GN=CDR4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 38/102 (37.25%), Postives = 67/102 (65.69%), Query Frame = 3
Query:   66 ITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKL 368
            + T TV EA+ ++A L+ P ++++ +K E  +  I+ + ++   +  +G  G +GL+  Q++R+SI +E++ +PKLL FLDEPTSGLDS  ++ +   I KL
Sbjct:  934 LETSTVREALEFAAYLRQPKSVSRKEKNEYVDYIIRLLEMEQYADAVVGVSG-EGLNVEQRKRLSIGVELVAKPKLLVFLDEPTSGLDSQTAWSICKLIRKL 1034          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: CDR3_CANAL (Opaque-specific ABC transporter CDR3 OS=Candida albicans GN=CDR3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 41/108 (37.96%), Postives = 70/108 (64.81%), Query Frame = 3
Query:   66 ITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLDQRDHG 386
            + T TV EA+ +SA+L+ P++++  +K    E  I  + ++  ++  +G  G +GL+  Q++R++I +E++ RPKLL FLDEPTSGLDS  ++ +   I KL   +HG
Sbjct:  928 LETSTVREALKFSARLRQPNSVSIAEKDSYVEKIIDLLEMRTYVDAIVGVPG-EGLNVEQRKRLTIAVELVARPKLLVFLDEPTSGLDSQTAWSICKLIRKL--ANHG 1032          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB43G_ARATH (ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.529e-11
Identity = 31/98 (31.63%), Postives = 62/98 (63.27%), Query Frame = 3
Query:   75 LTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKL 368
            LTV E++ YSA L+LP  ++   K       ++ + L++  ++ +G  G  G++  Q++R++I +E+++ P ++F+DEPT+GLD+ A+  VM  +  +
Sbjct:  890 LTVQESLKYSAWLRLPCNISSETKSAIVNEVLETIELEEIKDSLVGVPGISGVTAEQRKRLTIAVELVSNPSIIFMDEPTTGLDARAAAIVMRAVKNI 987          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.997e-11
Identity = 34/95 (35.79%), Postives = 59/95 (62.11%), Query Frame = 3
Query:   75 LTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRI 359
            +TV E++ YSA L+LP  + + Q+K   +  +  + L     + +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +
Sbjct:  943 VTVYESLLYSAWLRLPAEVDEKQRKMFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAV 1037          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.997e-11
Identity = 34/95 (35.79%), Postives = 60/95 (63.16%), Query Frame = 3
Query:   75 LTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRI 359
            +TVSE++ +SA L+LP  +    +K   E  ++ + L+   +  +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +
Sbjct:  967 VTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1061          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: AB40G_ARATH (ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.997e-11
Identity = 35/95 (36.84%), Postives = 59/95 (62.11%), Query Frame = 3
Query:   75 LTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRI 359
            +TV E++ YSA L+LP  + K ++K   E  ++ + L       +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +
Sbjct:  925 VTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1019          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: CDR2_CANAL (Multidrug resistance protein CDR2 OS=Candida albicans GN=CDR2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.608e-11
Identity = 40/108 (37.04%), Postives = 68/108 (62.96%), Query Frame = 3
Query:   66 ITTLTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLL-FLDEPTSGLDSAASYYVMSRIAKLDQRDHG 386
            + T TV EA+ +SA L+  + ++K +K +  +  I  + + D  +  +G  G +GL+  Q++R++I +E++ +PKLL FLDEPTSGLDS  ++ +   + KL   DHG
Sbjct:  945 LETTTVREALQFSAYLRQSNKISKKEKDDYVDYVIDLLEMTDYADALVGVAG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL--ADHG 1049          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.406e-11
Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   75 LTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRI 359
            +TV E++ YSA L+LP  +    +K   E  ++ + L       +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +
Sbjct:  946 VTVYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1040          
BLAST of CF509563 vs. ExPASy Swiss-Prot
Match: PDR5_ORYSJ (Pleiotropic drug resistance protein 5 OS=Oryza sativa subsp. japonica GN=PDR5 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.406e-11
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   75 LTVSEAVYYSAQLQLPDTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRI 359
            LTV E++ YSA L+L   + K  +K   E  +  + L    +  +G  G  GLS  Q++R++I +E++  P ++F+DEPTSGLD+ A+  VM  +
Sbjct:  952 LTVYESIVYSAWLRLSSEVDKNTRKVFVEEVMSLVELDVLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1046          
The following BLAST results are available for this feature:
BLAST of CF509563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
AB37G_ARATH1.171e-1133.68ABC transporter G family member 37 OS=Arabidopsis ... [more]
CDR4_CANAL1.529e-1137.25ABC transporter CDR4 OS=Candida albicans GN=CDR4 P... [more]
CDR3_CANAL1.529e-1137.96Opaque-specific ABC transporter CDR3 OS=Candida al... [more]
AB43G_ARATH1.529e-1131.63ABC transporter G family member 43 OS=Arabidopsis ... [more]
TUR2_SPIPO1.997e-1135.79Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
PDR2_ORYSJ1.997e-1135.79Probable pleiotropic drug resistance protein 2 OS=... [more]
AB40G_ARATH1.997e-1136.84ABC transporter G family member 40 OS=Arabidopsis ... [more]
CDR2_CANAL2.608e-1137.04Multidrug resistance protein CDR2 OS=Candida albic... [more]
PDR7_ORYSJ3.406e-1135.79Putative pleiotropic drug resistance protein 7 OS=... [more]
PDR5_ORYSJ3.406e-1136.84Pleiotropic drug resistance protein 5 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-071 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509563 ID=CF509563; Name=CF509563; organism=Citrus sinensis; type=EST; length=404bp
TAATGGGCGCAAACGGGCACTGGCTTATGGAACCTCGGCATATGTGACAC
AAGATGACGCCTTTGATCACTACACTGACGGTTAGTGAAGCAGTGTACTA
CTCAGCTCAGCTGCAATTGCCGGACACGATGACCAAATTACAGAAGAAAG
AAAGAGCAGAAATGACAATAAAAGAAATGGGGCTCCAAGATGCCATGAAT
ACAAGAATTGGAGGCTGGGGAGCTAAAGGCCTTAGTGGTGGTCAAAAGAG
GAGAGTTAGCATTTGCATTGAAATGTTGACTCGACCAAAGCTTCTATTTC
TTGACGAGCCAACAAGCGGACTTGATAGTGCTGCTTCATACTATGTAATG
AGCAGGATTGCTAAGCTTGATCAAAGAGATCATGGAGTGGGATCAAGAAC
AATA
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