CF509575

Overview
NameCF509575
Unique NameCF509575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509575 vs. ExPASy Swiss-Prot
Match: RS11_METVS (30S ribosomal protein S11P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps11p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.709e-27
Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  162 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 500
            +G+ HI+AS+N+T +HVTD++G ET+ +++GGM V+  RDESSPYAAM AA  ++   ++ GI  +H+K+RA            AQ+A+RAL+R+G+KIGRIED TPIP D T
Sbjct:    5 WGLVHIYASYNNTILHVTDVTGAETIAKVSGGMIVRNQRDESSPYAAMQAAFKIAELMRDKGIDQVHVKVRAAGGQKSKNPGPGAQAAIRALSRAGIKIGRIEDATPIPHDGT 117          
BLAST of CF509575 vs. ExPASy Swiss-Prot
Match: RS11_METST (30S ribosomal protein S11P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps11p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.709e-27
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  162 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 500
            +GVAH+++SFN+T I VTD++G ET+ + +GG  V++DR ESSP+AAM AA  V+   KE GI  LHIK+RA            AQ+ +RALAR+G+KIG+IEDVTPIP D T
Sbjct:    7 WGVAHVYSSFNNTIITVTDITGAETITQWSGGKVVRSDRQESSPFAAMEAANRVADDIKEKGIAGLHIKVRASGGNGPRTPGPGAQATIRALARAGIKIGKIEDVTPIPHDGT 119          
BLAST of CF509575 vs. ExPASy Swiss-Prot
Match: RS11_METMP (30S ribosomal protein S11P OS=Methanococcus maripaludis GN=rps11p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.709e-27
Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  162 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 500
            +G+ HI+AS+N+T +HVTDL+G ET+ +++GGM V+  RDESSPYAAM AA  ++   ++ GI  +H+K+RA            AQ+A+RAL+R+G++IGRIED TPIP D T
Sbjct:    5 WGLVHIYASYNNTILHVTDLTGAETIAKVSGGMIVRNQRDESSPYAAMQAAFKIADLMRDKGIDQVHVKVRATGGQKSKNPGPGAQAAIRALSRAGIRIGRIEDATPIPHDGT 117          
BLAST of CF509575 vs. ExPASy Swiss-Prot
Match: RS11_METM7 (30S ribosomal protein S11P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps11p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.709e-27
Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  162 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 500
            +G+ HI+AS+N+T +HVTDL+G ET+ +++GGM V+  RDESSPYAAM AA  ++   ++ GI  +H+K+RA            AQ+A+RAL+R+G++IGRIED TPIP D T
Sbjct:    5 WGLVHIYASYNNTILHVTDLTGAETIAKVSGGMIVRNQRDESSPYAAMQAAFKIADLMRDKGIDQVHVKVRATGGQKSKNPGPGAQAAIRALSRAGIRIGRIEDATPIPHDGT 117          
BLAST of CF509575 vs. ExPASy Swiss-Prot
Match: RS11_METM5 (30S ribosomal protein S11P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps11p PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.709e-27
Identity = 57/113 (50.44%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  162 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 500
            +G+ HI+AS+N+T +HVTDL+G ET+ +++GGM V+  RDESSPYAAM AA  ++   ++ GI  +H+K+RA            AQ+A+RAL+R+G++IGRIED TPIP D T
Sbjct:    5 WGLVHIYASYNNTILHVTDLTGAETIAKVSGGMIVRNQRDESSPYAAMQAAFKIADLMRDKGIDQVHVKVRATGGQKSKNPGPGAQAAIRALSRAGIRIGRIEDATPIPHDGT 117          
BLAST of CF509575 vs. ExPASy Swiss-Prot
Match: RS11_HALWD (30S ribosomal protein S11P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps11p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.262e-27
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 3
Query:  153 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 500
            E  +GVAH+ ASFN+T I VTDL+G ET+V+ +GG  VK +RDE+SPYAAM  A+ V+   K  GI  LH+++R             AQ+ +RALAR+G++IGRIEDVTPIP D T
Sbjct:    8 EKRWGVAHVHASFNNTLITVTDLTGAETIVKSSGGAVVKQNRDEASPYAAMQMAESVAEDIKAAGIDGLHVRVRGPGGNGNKSPGPGAQATIRALARAGLEIGRIEDVTPIPHDGT 123          
BLAST of CF509575 vs. ExPASy Swiss-Prot
Match: RS11_SULSO (30S ribosomal protein S11P OS=Sulfolobus solfataricus GN=rps11p PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.079e-26
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 3
Query:  162 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 497
            +G+AHI+AS N+T + ++DL+G E + R +GGM VKADR++SSPYAAMLAA   ++   E GI ALHIK+RA            AQ A+RALAR+G  IGRIEDVTPIP D+
Sbjct:    9 WGIAHIYASQNNTLLTISDLTGAEIISRASGGMVVKADREKSSPYAAMLAANKAASDALEKGIMALHIKVRAPGGYGSKTPGPGAQPAIRALARAGFIIGRIEDVTPIPHDT 120          
BLAST of CF509575 vs. ExPASy Swiss-Prot
Match: RS11_METTH (30S ribosomal protein S11P OS=Methanobacterium thermoautotrophicum GN=rps11p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.079e-26
Identity = 60/113 (53.10%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  162 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 500
            +G+A+I++SFN+T I +TD++G ET+ + +GG  V+ADR ESSP+AAM AA   +   KE GI  LHIK+RA            AQ+A+RALAR+GM+IG+IEDVTPIP D T
Sbjct:    7 WGIANIYSSFNNTIITITDITGAETITQWSGGKVVRADRQESSPFAAMEAATRAADDAKEKGIVGLHIKVRAPGGNGPRTPGPGAQAAIRALARAGMRIGKIEDVTPIPHDGT 119          
BLAST of CF509575 vs. ExPASy Swiss-Prot
Match: RS11_METJA (30S ribosomal protein S11P OS=Methanocaldococcus jannaschii GN=rps11p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.079e-26
Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = 3
Query:  162 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 500
            +G+ HI++S+N+T IH TD++G ET+ R++GG   +  RDE SPYAAM AA  ++   KE GI  +HIK+RA            AQ+A+RALAR+G++IGRIEDVTP+P D T
Sbjct:    9 WGIVHIYSSYNNTIIHATDITGAETIARVSGGRVTRNQRDEGSPYAAMQAAFKLAEVLKERGIENIHIKVRAPGGSGQKNPGPGAQAAIRALARAGLRIGRIEDVTPVPHDGT 121          
BLAST of CF509575 vs. ExPASy Swiss-Prot
Match: RS11_THEAC (30S ribosomal protein S11P OS=Thermoplasma acidophilum GN=rps11p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.140e-26
Identity = 63/112 (56.25%), Postives = 79/112 (70.54%), Query Frame = 3
Query:  165 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 500
            G+AHI+AS N+T IHVTD +G ET+  ++GGM VK DRD++SPYAAM AA  VS   KE  IT L IK+RA            AQ+A+RAL+R+G+KI RIE+VTPIP D T
Sbjct:    8 GIAHIYASQNNTIIHVTDPTGAETIAMVSGGMVVKNDRDQASPYAAMKAADMVSEALKEKEITDLIIKVRAPGGNKSKIPGPGAQAAIRALSRAGLKIVRIEEVTPIPHDGT 119          
The following BLAST results are available for this feature:
BLAST of CF509575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 210
Match NameE-valueIdentityDescription
RS11_METVS3.709e-2750.4430S ribosomal protein S11P OS=Methanococcus vannie... [more]
RS11_METST3.709e-2753.9830S ribosomal protein S11P OS=Methanosphaera stadt... [more]
RS11_METMP3.709e-2750.4430S ribosomal protein S11P OS=Methanococcus maripa... [more]
RS11_METM73.709e-2750.4430S ribosomal protein S11P OS=Methanococcus maripa... [more]
RS11_METM53.709e-2750.4430S ribosomal protein S11P OS=Methanococcus maripa... [more]
RS11_HALWD8.262e-2752.5930S ribosomal protein S11P OS=Haloquadratum walsby... [more]
RS11_SULSO1.079e-2655.3630S ribosomal protein S11P OS=Sulfolobus solfatari... [more]
RS11_METTH1.079e-2653.1030S ribosomal protein S11P OS=Methanobacterium the... [more]
RS11_METJA1.079e-2650.4430S ribosomal protein S11P OS=Methanocaldococcus j... [more]
RS11_THEAC3.140e-2656.2530S ribosomal protein S11P OS=Thermoplasma acidoph... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-083 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-79_G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509575 ID=CF509575; Name=CF509575; organism=Citrus sinensis; type=EST; length=535bp
GTCTATTGTTTAGGGTTTTCACATTTTCCTTTCGTCTAGGAACAAACCCT
AGCCTTCTCAATCCATCTCGTGTTTTCGCAGGCATGTCGAGGAGAAAGAA
TAGGGAGCCTAAGGAAGAGAATGTGACTCTAGGACCTGCTGTGAGAGATG
GGGAGCATGTTTTTGGAGTTGCCCACATCTTTGCATCGTTCAATGATACA
TTTATTCATGTGACTGATCTGTCAGGCAGAGAAACCCTTGTCCGTATCAC
TGGTGGTATGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCTG
CCATGCTTGCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATC
ACTGCTCTTCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAAC
ACCTGGTCCAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGA
TGAAAATTGGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACA
CGCAGAAAGGGTGGTAGAAGAGGAAGAAGGCTTTA
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