CF509636 | Citrus Genome Database

Overview


Name	CF509636
Unique Name	CF509636
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	441

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H33_XENTR (Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.260e-47
Identity = 88/112 (78.57%), Postives = 91/112 (81.25%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct:   16 APRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 5.260e-47
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H33_XENLA (Histone H3.3 OS=Xenopus laevis PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.260e-47
Identity = 88/112 (78.57%), Postives = 91/112 (81.25%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct:   16 APRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 5.260e-47
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H33_TRIPS (Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3 PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.260e-47
Identity = 88/112 (78.57%), Postives = 91/112 (81.25%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct:   16 APRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 5.260e-47
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H33_SPISO (Histone H3.3 OS=Spisula solidissima PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.260e-47
Identity = 88/112 (78.57%), Postives = 91/112 (81.25%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct:   16 APRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 5.260e-47
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H33_RAT (Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.260e-47
Identity = 88/112 (78.57%), Postives = 91/112 (81.25%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct:   16 APRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 5.260e-47
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H33_RABIT (Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.260e-47
Identity = 88/112 (78.57%), Postives = 91/112 (81.25%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct:   16 APRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 5.260e-47
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H33_PIG (Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.260e-47
Identity = 88/112 (78.57%), Postives = 91/112 (81.25%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct:   16 APRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 5.260e-47
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H33_MOUSE (Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.260e-47
Identity = 88/112 (78.57%), Postives = 91/112 (81.25%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct:   16 APRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 5.260e-47
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H33_HUMAN (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.260e-47
Identity = 88/112 (78.57%), Postives = 91/112 (81.25%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct:   16 APRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 5.260e-47
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

BLAST of CF509636 vs. ExPASy Swiss-Prot
Match: H33_DROME (Histone H3.3 OS=Drosophila melanogaster GN=His3.3A PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.260e-47
Identity = 88/112 (78.57%), Postives = 91/112 (81.25%), Query Frame = 2

Query:  104 ATASSLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 439
            A    LATKAARKSAP+TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQL
Sbjct:   16 APRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 127

HSP 2 Score: 37.3502 bits (85), Expect = 5.260e-47
Identity = 17/17 (100.00%), Postives = 17/17 (100.00%), Query Frame = 3

Query:   57 MARTKQTARKSTGGKAP 107
            MARTKQTARKSTGGKAP
Sbjct:    1 MARTKQTARKSTGGKAP 17

The following BLAST results are available for this feature:

BLAST of CF509636 vs. ExPASy Swiss-Prot

BLAST of CF509636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190


Match Name	E-value	Identity	Description
H33_XENTR	5.260e-47	78.57	Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1...	[more]
H33_XENLA	5.260e-47	78.57	Histone H3.3 OS=Xenopus laevis PE=1 SV=3	[more]
H33_TRIPS	5.260e-47	78.57	Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3...	[more]
H33_SPISO	5.260e-47	78.57	Histone H3.3 OS=Spisula solidissima PE=1 SV=2	[more]
H33_RAT	5.260e-47	78.57	Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV...	[more]
H33_RABIT	5.260e-47	78.57	Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=...	[more]
H33_PIG	5.260e-47	78.57	Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3	[more]
H33_MOUSE	5.260e-47	78.57	Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2	[more]
H33_HUMAN	5.260e-47	78.57	Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2	[more]
H33_DROME	5.260e-47	78.57	Histone H3.3 OS=Drosophila melanogaster GN=His3.3A...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_125000-144 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_F01 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF509636 ID=CF509636; Name=CF509636; organism=Citrus sinensis; type=EST; length=441bp
ATTTTGTTTCACTTTCTCAAGAAACAAACACTCATTTTCGTCTTCTACTC
TCACAAATGGCCCGCACAAAGCAAACCGCTAGGAAATCAACCGGAGGAAA
GGCGCCACTGCAAGCAGCCTTGCAACAAAGGCGGCTCGTAAGTCGGCTCC
GGCGACGGGAGGAGTGAAGAAGCCTCACCGTTTCAGGCCAGGAACCGTTG
CTCTGAGAGAGATCAGGAAGTACCAGAAGAGCACTGAGCTTTTGATCAGG
AAGCTTCCGTTCCAAAGACTCGTTAGGGAAATCGCTCAGGACTTTAAGAC
CGATCTGAGGTTCCAAAGCAGCGCCGTCGCGGCTCTTCAAGAAGCTGCCG
AGGCTTATCTAGTCGGTCTCTTTGAAGATACTAACCTCTGCGCCATTCAT
GCCAAGAGAGTTACTATTATGCCCAAGGATATTCAGCTCGC