CF509648

Overview
NameCF509648
Unique NameCF509648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF41_ARATH (Dof zinc finger protein DOF4.1 OS=Arabidopsis thaliana GN=DOF4.1 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.768e-22
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 2
Query:  260 CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCXXXXXXXXXXXXXXQ--------DQPLMSSNTSPLTNFPPLSYDTNDLSLAFA 538
            CPRC+S+NTKFCYYNNYSL+QPRY CKSCRRYWT+GG+LRNVPVGGG                        + P + ++++  +N      + NDLSL+F+
Sbjct:   70 CPRCNSSNTKFCYYNNYSLAQPRYLCKSCRRYWTEGGSLRNVPVGGGSRKNKKLPFPNSSTSSSTKNLPDLNPPFVFTSSASSSNPSKTHQNNNDLSLSFS 170          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF25_ARATH (Dof zinc finger protein DOF2.5 OS=Arabidopsis thaliana GN=DOF2.5 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 4.768e-22
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGG 397
            L CPRC+STNTKFCYYNNYSL+QPRYFCK CRRYWT+GG+LRNVPVGG
Sbjct:   80 LNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGG 127          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF37_ARATH (Dof zinc finger protein DOF3.7 OS=Arabidopsis thaliana GN=DOF3.7 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.062e-21
Identity = 41/48 (85.42%), Postives = 46/48 (95.83%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGG 397
            + CPRC+STNTKFCYYNNYSL+QPRYFCK CRRYWT+GG+LRNVPVGG
Sbjct:   74 VNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGG 121          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF16_ARATH (Dof zinc finger protein DOF1.6 OS=Arabidopsis thaliana GN=DOF1.6 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.387e-21
Identity = 41/49 (83.67%), Postives = 47/49 (95.92%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGG 400
            L CPRC+ST TKFCYYNNY+L+QPRY+CKSCRRYWT+GGTLR+VPVGGG
Sbjct:   29 LPCPRCNSTTTKFCYYNNYNLAQPRYYCKSCRRYWTQGGTLRDVPVGGG 77          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF34_ARATH (Dof zinc finger protein DOF3.4 OS=Arabidopsis thaliana GN=DOF3.4 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.812e-21
Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGG 400
            L CPRCDS+NTKFCYYNNY+ SQPR+FCK+CRRYWT GGTLR+VPVGGG
Sbjct:   30 LPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDVPVGGG 78          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF44_ARATH (Dof zinc finger protein DOF4.4 OS=Arabidopsis thaliana GN=DOF4.4 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.090e-21
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 2
Query:  260 CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGC 403
            CPRCDS NTKFC+YNNYS SQPRYFCK+CRRYWT GG LRN+PVGG C
Sbjct:   26 CPRCDSDNTKFCFYNNYSESQPRYFCKNCRRYWTHGGALRNIPVGGSC 73          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF58_ARATH (Dof zinc finger protein DOF5.8 OS=Arabidopsis thaliana GN=DOF5.8 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.036e-21
Identity = 40/48 (83.33%), Postives = 45/48 (93.75%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGG 397
            L CPRC+STNTKFCYYNNY+ SQPR+FCKSCRRYWT GGTLR++PVGG
Sbjct:   32 LSCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGG 79          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: MNB1A_MAIZE (Dof zinc finger protein MNB1A OS=Zea mays GN=MNB1A PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.003e-20
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 2
Query:  260 CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGG 400
            CPRC S +TKFCYYNNY+ SQPR+FCK CRRYWTKGGTLRNVPVGGG
Sbjct:   49 CPRCASRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGG 95          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF1A_ARATH (Dof zinc finger protein DOF1.10 OS=Arabidopsis thaliana GN=DOF1.10 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.215e-19
Identity = 35/49 (71.43%), Postives = 45/49 (91.84%), Query Frame = 2
Query:  254 LKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGG 400
            + CPRC+S NTKFCYYNNY+++QPRYFC++C+RYWT GG++RNVPVG G
Sbjct:  132 IPCPRCESANTKFCYYNNYNVNQPRYFCRNCQRYWTAGGSMRNVPVGSG 180          
BLAST of CF509648 vs. ExPASy Swiss-Prot
Match: DOF43_ARATH (Dof zinc finger protein DOF4.3 OS=Arabidopsis thaliana GN=DOF4.3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.934e-19
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 2
Query:  260 CPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGG 397
            C RCDS NTKFCYYNNYS  QPRYFCK+CRRYWT GG LRNVP+GG
Sbjct:   27 CARCDSDNTKFCYYNNYSEFQPRYFCKNCRRYWTHGGALRNVPIGG 72          
The following BLAST results are available for this feature:
BLAST of CF509648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
DOF41_ARATH4.768e-2248.51Dof zinc finger protein DOF4.1 OS=Arabidopsis thal... [more]
DOF25_ARATH4.768e-2287.50Dof zinc finger protein DOF2.5 OS=Arabidopsis thal... [more]
DOF37_ARATH1.062e-2185.42Dof zinc finger protein DOF3.7 OS=Arabidopsis thal... [more]
DOF16_ARATH1.387e-2183.67Dof zinc finger protein DOF1.6 OS=Arabidopsis thal... [more]
DOF34_ARATH1.812e-2183.67Dof zinc finger protein DOF3.4 OS=Arabidopsis thal... [more]
DOF44_ARATH3.090e-2183.33Dof zinc finger protein DOF4.4 OS=Arabidopsis thal... [more]
DOF58_ARATH4.036e-2183.33Dof zinc finger protein DOF5.8 OS=Arabidopsis thal... [more]
MNB1A_MAIZE2.003e-2085.11Dof zinc finger protein MNB1A OS=Zea mays GN=MNB1A... [more]
DOF1A_ARATH2.215e-1971.43Dof zinc finger protein DOF1.10 OS=Arabidopsis tha... [more]
DOF43_ARATH4.934e-1982.61Dof zinc finger protein DOF4.3 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-156 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509648 ID=CF509648; Name=CF509648; organism=Citrus sinensis; type=EST; length=607bp
AAACCATCTCTCTCTCTCTCTCTCCCTCTTGAGTCTTTCTCTTCAGCTAA
GCTAAGCTTGTCACTCTCTTAGAAAAAAAATTATAAAAATTCAACTTTGT
TTCAATTATTCTGAAGAGTGTTTGATTATTGTTGCATGGATGGATGCTTC
AAGTGGACAACATCAGGAAATGGCTACTTATTCATTGGAAAGCATGTTGG
TTTGCTCAAAAGCACAACAAGAAAGGAAGCCAAGGCCTCAACCGGAACAA
GCTCTCAAATGCCCAAGATGTGACTCCACCAACACAAAATTCTGCTACTA
CAACAACTACAGCCTCTCTCAGCCAAGATACTTCTGCAAATCTTGCAGGA
GGTATTGGACCAAAGGCGGCACACTCAGAAATGTTCCGGTGGGTGGAGGG
TGCAGGAAAAACAAACGGTCGTCATCCTCGTCATCAAAGAGAAGCCAAGA
TCAACCATTGATGAGTTCCAACACAAGCCCTCTCACCAATTTCCCTCCCT
TGAGTTATGACACCAATGACTTGAGTCTTGCATTTGCTAGGCTCCAAAAG
CAAAACGGTGGGCAACTAGGGTTTGACGATCAGCATGATTTTTCTATTTT
GGGGAAC
back to top