CF509651

Overview
NameCF509651
Unique NameCF509651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length183
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509651 vs. ExPASy Swiss-Prot
Match: DNAK_BORHD (Chaperone protein dnaK OS=Borrelia hermsii (strain DAH) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.753e-20
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 3
Query:    3 PAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTF 173
            PAYFND+QR ATKDAG+IAGLDV RI+NEPTAA+LAYG EKKN E + V+DLGGGTF
Sbjct:  143 PAYFNDAQRQATKDAGKIAGLDVKRIVNEPTAAALAYGIEKKNEEIVAVYDLGGGTF 199          
BLAST of CF509651 vs. ExPASy Swiss-Prot
Match: DNAK_RUBXD (Chaperone protein dnaK OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 46/57 (80.70%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    3 PAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTF 173
            PAYF D+QR ATKDAGRIAGL+V RIINEPTAA+LAYG +K+N++TILVFDLGGGTF
Sbjct:  142 PAYFEDAQRQATKDAGRIAGLNVKRIINEPTAAALAYGLDKENDQTILVFDLGGGTF 198          
BLAST of CF509651 vs. ExPASy Swiss-Prot
Match: DNAK_RHOCA (Chaperone protein dnaK OS=Rhodobacter capsulatus GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 PAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTF 173
            PAYFND+QR ATKDAG+IAGL+VLRIINEPTAA+LAYG +KK+++TI V+DLGGGTF
Sbjct:  142 PAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKDSKTIAVYDLGGGTF 198          
BLAST of CF509651 vs. ExPASy Swiss-Prot
Match: DNAK_PARDP (Chaperone protein dnaK OS=Paracoccus denitrificans (strain Pd 1222) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 PAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTF 173
            PAYFND+QR ATKDAG+IAGL+VLRIINEPTAA+LAYG +KK+++TI V+DLGGGTF
Sbjct:  142 PAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKDSKTIAVYDLGGGTF 198          
BLAST of CF509651 vs. ExPASy Swiss-Prot
Match: DNAK_HYPNA (Chaperone protein dnaK OS=Hyphomonas neptunium (strain ATCC 15444) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 3
Query:    3 PAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTF 173
            PAYFND+QR ATKDAGRIAGL+VLRIINEPTAA+LAYG +K  N+TI V+DLGGGTF
Sbjct:  143 PAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALAYGLDKGGNKTIAVYDLGGGTF 199          
BLAST of CF509651 vs. ExPASy Swiss-Prot
Match: DNAK_DESPS (Chaperone protein dnaK OS=Desulfotalea psychrophila GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 48/57 (84.21%), Postives = 50/57 (87.72%), Query Frame = 3
Query:    3 PAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTF 173
            PAYFNDSQR ATKDAG+IAGLDV RIINEPTAASLAYG +KK  E I VFDLGGGTF
Sbjct:  143 PAYFNDSQRQATKDAGKIAGLDVKRIINEPTAASLAYGLDKKVEEKIAVFDLGGGTF 199          
BLAST of CF509651 vs. ExPASy Swiss-Prot
Match: DNAK_DESOH (Chaperone protein dnaK OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 47/57 (82.46%), Postives = 52/57 (91.23%), Query Frame = 3
Query:    3 PAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTF 173
            PAYF+DSQR ATKDAG+IAGL+VLRIINEPTAASLAYG +KK +E I VFDLGGGTF
Sbjct:  143 PAYFSDSQRQATKDAGKIAGLNVLRIINEPTAASLAYGLDKKKDEKIAVFDLGGGTF 199          
BLAST of CF509651 vs. ExPASy Swiss-Prot
Match: DNAK_CLOTH (Chaperone protein dnaK OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.289e-20
Identity = 46/57 (80.70%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 PAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTF 173
            PAYF+DSQR ATKDAGRIAGL+VLRIINEPTAA+LAYG +K++++ ILVFDLGGGTF
Sbjct:  119 PAYFSDSQRQATKDAGRIAGLEVLRIINEPTAAALAYGLDKESDQKILVFDLGGGTF 175          
BLAST of CF509651 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS5 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.990e-20
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    3 PAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTF 173
            PAYFND+QR ATKDAG+IAGL+VLRIINEPTAA+LAYG +KK+ +TI V+DLGGGTF
Sbjct:  142 PAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKDTKTIAVYDLGGGTF 198          
BLAST of CF509651 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS4 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dnaK PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.990e-20
Identity = 45/57 (78.95%), Postives = 53/57 (92.98%), Query Frame = 3
Query:    3 PAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTF 173
            PAYFND+QR ATKDAG+IAGL+VLRIINEPTAA+LAYG +KK+ +TI V+DLGGGTF
Sbjct:  142 PAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKDTKTIAVYDLGGGTF 198          
The following BLAST results are available for this feature:
BLAST of CF509651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_BORHD1.753e-2078.95Chaperone protein dnaK OS=Borrelia hermsii (strain... [more]
DNAK_RUBXD2.289e-2080.70Chaperone protein dnaK OS=Rubrobacter xylanophilus... [more]
DNAK_RHOCA2.289e-2078.95Chaperone protein dnaK OS=Rhodobacter capsulatus G... [more]
DNAK_PARDP2.289e-2078.95Chaperone protein dnaK OS=Paracoccus denitrificans... [more]
DNAK_HYPNA2.289e-2080.70Chaperone protein dnaK OS=Hyphomonas neptunium (st... [more]
DNAK_DESPS2.289e-2084.21Chaperone protein dnaK OS=Desulfotalea psychrophil... [more]
DNAK_DESOH2.289e-2082.46Chaperone protein dnaK OS=Desulfococcus oleovorans... [more]
DNAK_CLOTH2.289e-2080.70Chaperone protein dnaK OS=Clostridium thermocellum... [more]
DNAK_RHOS52.990e-2078.95Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]
DNAK_RHOS42.990e-2078.95Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-159 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-7_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509651 ID=CF509651; Name=CF509651; organism=Citrus sinensis; type=EST; length=183bp
TGCCTGCTTACTTCAATGATTCCCAGAGAACAGCAACAAAGGATGCTGGT
CGAATTGCTGGCTTAGATGTTCTGCGTATAATTAATGAGCCTACTGCTGC
TTCGTTGGCATATGGATTTGAAAAGAAAAACAACGAGACCATCCTAGTGT
TTGACCTTGGTGGTGGTACCTTCTTGATGTTTC
back to top