CF509681

Overview
NameCF509681
Unique NameCF509681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_ERWCT (50S ribosomal protein L5 OS=Erwinia carotovora subsp. atroseptica GN=rplE PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.102e-11
Identity = 44/142 (30.99%), Postives = 79/142 (55.63%), Query Frame = 2
Query:   35 RMASEKKLSNPMREIKVQKLVLNISVGES-GDR--LTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 430
            ++ +E   ++ M+  +V+K+ LN+ VGE+  D+  L  AA  L  +SGQ P+ +KAR +V  F IR+   I C VT+RG++  + LE  +     +++++  L  ++F   G +  G++E I    I YD    + G+D  +
Sbjct:   15 KLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLDNAAADLTAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFLERLISIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITI 156          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_RICTY (50S ribosomal protein L5 OS=Rickettsia typhi GN=rplE PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.275e-11
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = 2
Query:   80 KVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 433
            +++K+V+N+ VGE+      +  A   L  +SGQ P+ + AR ++ +F +R N KI C VT+R D+    LE  +     +VKE+     ++F   G F FG++E I    I YD    I GMD  +V
Sbjct:   30 QIKKIVINMGVGEAIADSKVINNALNDLTLISGQKPIVTLARKSIATFKLRENMKIGCKVTLRKDRMYDFLERLVIVALPRVKEFRGFSYKSFDGKGNFTFGLKEQIVFPEINYDKIDTIRGMDITIV 157          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_CAUCR (50S ribosomal protein L5 OS=Caulobacter crescentus GN=rplE PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.275e-11
Identity = 44/149 (29.53%), Postives = 81/149 (54.36%), Query Frame = 2
Query:   20 HHQQTRMASEKKL--SNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 430
            + ++ R A +++   +N M+  K+ K+VLN+ +GE+     +   A K L+ ++GQ PV +KAR ++  F +R    +   VT+R D+  + L+  +     +VK++  L  ++F   G +  G++EH+    I YD    I+GMD  V
Sbjct:   14 YRERIRAAMKEQFGYTNEMQIPKLDKIVLNMGIGEAVADSKKAQTALKDLQAIAGQKPVATKARKSIAGFKLREGMVVGAKVTLRKDRMYEFLDRLVTIALPRVKDFRGLNGKSFDGRGNYAMGLKEHLVFPEINYDQIEQIWGMDIIV 162          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_CAUCN (50S ribosomal protein L5 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplE PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.275e-11
Identity = 44/149 (29.53%), Postives = 81/149 (54.36%), Query Frame = 2
Query:   20 HHQQTRMASEKKL--SNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 430
            + ++ R A +++   +N M+  K+ K+VLN+ +GE+     +   A K L+ ++GQ PV +KAR ++  F +R    +   VT+R D+  + L+  +     +VK++  L  ++F   G +  G++EH+    I YD    I+GMD  V
Sbjct:   14 YRERIRAAMKEQFGYTNEMQIPKLDKIVLNMGIGEAVADSKKAQTALKDLQAIAGQKPVATKARKSIAGFKLREGMVVGAKVTLRKDRMYEFLDRLVTIALPRVKDFRGLNGKSFDGRGNYAMGLKEHLVFPEINYDQIEQIWGMDIIV 162          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_BLOFL (50S ribosomal protein L5 OS=Blochmannia floridanus GN=rplE PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.275e-11
Identity = 45/138 (32.61%), Postives = 76/138 (55.07%), Query Frame = 2
Query:   47 EKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 430
            E K  + M+  K+ K+ +++ VG+S      L RA + LE +SGQ PV +KAR ++ SF IR+ ++I C VT+R  +  +  E  +     +++++  L  ++F   G +  GI+E I    I YD   GI GM+  +
Sbjct:   19 EFKYKSVMQVPKINKITISMGVGKSIINKKFLERAIEDLEMISGQKPVITKARKSIASFKIRQGQEIGCKVTLRRKRMWEFFERLISIAIPRIRDFRGLSIKSFDGYGNYTMGIREQIIFPEINYDTIDGIRGMNITI 156          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_ANADF (50S ribosomal protein L5 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rplE PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.275e-11
Identity = 41/145 (28.28%), Postives = 81/145 (55.86%), Query Frame = 2
Query:   29 QTRMASEKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 433
            ++ +  E   +NPM+  K++K+V+N+ +GE+   G  +  + + L  ++GQ PV +KAR ++ +F +R+ + I   VT+RGD+  +  +  +     +V++++ +  + F   G +  G++E I    I YD    I GM+  VV
Sbjct:   14 RSELMKELGFANPMQAPKLEKIVVNMGLGEAINNGKIIDASVEQLSAITGQKPVVTKARKSIANFKLRQGQSIGAMVTLRGDRMYEFFDRLVSIALPRVRDFKGVSPKAFDGKGNYTLGVREQIIFPEINYDKVEKIKGMNITVV 158          
The following BLAST results are available for this feature:
BLAST of CF509681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RL5_ERWCT7.102e-1130.9950S ribosomal protein L5 OS=Erwinia carotovora sub... [more]
RL5_RICTY9.275e-1134.3850S ribosomal protein L5 OS=Rickettsia typhi GN=rp... [more]
RL5_CAUCR9.275e-1129.5350S ribosomal protein L5 OS=Caulobacter crescentus... [more]
RL5_CAUCN9.275e-1129.5350S ribosomal protein L5 OS=Caulobacter crescentus... [more]
RL5_BLOFL9.275e-1132.6150S ribosomal protein L5 OS=Blochmannia floridanus... [more]
RL5_ANADF9.275e-1128.2850S ribosomal protein L5 OS=Anaeromyxobacter sp. (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-189 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509681 ID=CF509681; Name=CF509681; organism=Citrus sinensis; type=EST; length=453bp
CTGAGCAGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGA
AGAAACTTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTC
AACATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGT
GCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACA
CTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGTG
ACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGT
GAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTG
GCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCC
ACTGGAATTTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTA
TCG
back to top