CF509681

Overview
NameCF509681
Unique NameCF509681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL11_DROME (60S ribosomal protein L11 OS=Drosophila melanogaster GN=RpL11 PE=1 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.047e-54
Identity = 105/140 (75.00%), Postives = 117/140 (83.57%), Query Frame = 2
Query:   32 TRMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGY 451
            T+        NPMR++ ++KL LNI VGESGDRLTRAAKVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL RPGY
Sbjct:    5 TKKIKRDPAKNPMRDLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRENFSSTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGY 144          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL11_DICDI (60S ribosomal protein L11 OS=Dictyostelium discoideum GN=rpl11 PE=2 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 8.859e-54
Identity = 102/135 (75.56%), Postives = 117/135 (86.67%), Query Frame = 2
Query:   47 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGY 451
            + K  N MR ++++KLVLNI VGESGDRL RAAKVLEQL+GQTPV+SKARYTVRSF IRRNE+IA +VTVRG+KA ++LE GLKV+E+EL  RNFS  G FGFGIQEHIDLGIKYDPS GIYGMDFFVVL RPG+
Sbjct:   28 KSKKDNVMRGLRIEKLVLNICVGESGDRLVRAAKVLEQLTGQTPVYSKARYTVRSFNIRRNEQIAAHVTVRGEKAAEILEKGLKVREFELRARNFSTQGSFGFGIQEHIDLGIKYDPSIGIYGMDFFVVLSRPGF 162          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL11_LEICH (60S ribosomal protein L11 OS=Leishmania chagasi GN=RPL11 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.671e-52
Identity = 104/137 (75.91%), Postives = 115/137 (83.94%), Query Frame = 2
Query:   38 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPG 448
            M +E K +NPMREI V+KL +NI VGESGDRLTRA+KVLEQL  QTPV S+AR TVR+FGIRRNEKIA + TVRG KA +LLE GLKVKE+EL   NFSDTG FGFGI EHIDLGIKYDPSTGIYGMDF+VVL R G
Sbjct:    1 MVAESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVLGRRG 137          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL11_TETTH (60S ribosomal protein L11 OS=Tetrahymena thermophila GN=RPL11 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.850e-52
Identity = 97/132 (73.48%), Postives = 116/132 (87.88%), Query Frame = 2
Query:   53 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPG 448
            K  N MRE+K+ KLV+N  VGESGD+LT+AAKVL+ LSGQ PVFS+ARYT+RSFGI+RNEK+A +VT+RGDKA  +L  GLKVKE EL ++NFS+TG FGFGIQEHIDLG+KYDPSTGI+GMDF+VVLERPG
Sbjct:    4 KKENKMREVKIAKLVINCCVGESGDKLTKAAKVLKDLSGQEPVFSRARYTIRSFGIKRNEKMAVHVTIRGDKARDILTRGLKVKEMELRKKNFSNTGNFGFGIQEHIDLGMKYDPSTGIFGMDFYVVLERPG 135          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL11_CHLRE (60S ribosomal protein L11 OS=Chlamydomonas reinhardtii GN=RPL11 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.850e-52
Identity = 97/128 (75.78%), Postives = 114/128 (89.06%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGY 451
            MREI++ KLVLNI+V ESGDRL +AAKVLEQL+ Q PV+ +AR+TVRSF IRRNEKI+CYVTVRG+KA  L++ GL VKE+EL+R+NFSDTG FGFGIQEHIDLG+KYDPSTGIYGMDF+V LER GY
Sbjct:    1 MREIRISKLVLNIAVAESGDRLQKAAKVLEQLTSQVPVYGRARFTVRSFAIRRNEKISCYVTVRGEKAYDLVKRGLAVKEFELIRKNFSDTGNFGFGIQEHIDLGLKYDPSTGIYGMDFYVCLERRGY 128          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL11_LEIMA (60S ribosomal protein L11 OS=Leishmania major GN=RPL11 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.722e-52
Identity = 103/137 (75.18%), Postives = 115/137 (83.94%), Query Frame = 2
Query:   38 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPG 448
            M +E K +NPMREI V+KL +NI VGESGDRLTRA+KVLEQL  QTPV S+AR TVR+FGIRRNEKIA + TVRG KA +LLE GLKVKE+EL   NF+DTG FGFGI EHIDLGIKYDPSTGIYGMDF+VVL R G
Sbjct:    1 MVAESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVLGRRG 137          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL11_SPOFR (60S ribosomal protein L11 OS=Spodoptera frugiperda GN=RpL11 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 4.550e-50
Identity = 99/125 (79.20%), Postives = 109/125 (87.20%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVL 436
            N MR + ++KL LNI VGESGDRLTRAAKVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL
Sbjct:   25 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVL 149          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL11_TOXCA (60S ribosomal protein L11 (Fragment) OS=Toxocara canis GN=RPL11 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 5.756e-45
Identity = 90/114 (78.95%), Postives = 99/114 (86.84%), Query Frame = 2
Query:   47 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 388
            EKK  N MRE+K+QKL LNI VGE GDRLTRAAKVLEQL+GQTPVFSKARYTVR+FGIRRNEKIA + TVRG KA ++LE GLKVKEYEL + NFSDTG FG G+QEHIDLGIK
Sbjct:   12 EKKARNVMRELKIQKLCLNICVGEFGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGLGVQEHIDLGIK 125          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL11_ENCCU (60S ribosomal protein L11 OS=Encephalitozoon cuniculi GN=RPL11 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.852e-43
Identity = 85/127 (66.93%), Postives = 103/127 (81.10%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPG 448
            MREI ++KL ++I   ESG +L RAAKVLEQL+GQ PV SKAR T+R+FGIRRNEKIA +V V G KA +LL + L+VKEYEL    FS+ GCFGFGI+EHIDLG+KYDP+ GI+GMDFFV+L RPG
Sbjct:    1 MREISIKKLSIHICARESGAKLDRAAKVLEQLTGQKPVTSKARMTIRNFGIRRNEKIAVHVNVSGKKAYELLNTALRVKEYELKESCFSNNGCFGFGIEEHIDLGLKYDPNIGIFGMDFFVILARPG 127          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_PYRKO (50S ribosomal protein L5P OS=Pyrococcus kodakaraensis GN=rpl5p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.921e-32
Identity = 69/132 (52.27%), Postives = 96/132 (72.73%), Query Frame = 2
Query:   59 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            ++PMR+ ++ K+ +NI VGESG+RLT+A  +LEQL GQ P+  +A+ T R FGIRR E IA  VT+RG+KA Q+L+  L+  + +L   NF + G F FGIQEHI++ G++YDP  GI+GMD  V LERPG+
Sbjct:   14 AHPMRKPRIAKVTINIGVGESGERLTKAETMLEQLVGQKPIRRRAKQTNRDFGIRRGEPIAVKVTLRGEKAYQMLDRLLEAVDRKLKASNFDEHGNFCFGIQEHINIPGVEYDPEIGIFGMDVCVTLERPGF 145          
The following BLAST results are available for this feature:
BLAST of CF509681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RL11_DROME1.047e-5475.0060S ribosomal protein L11 OS=Drosophila melanogast... [more]
RL11_DICDI8.859e-5475.5660S ribosomal protein L11 OS=Dictyostelium discoid... [more]
RL11_LEICH1.671e-5275.9160S ribosomal protein L11 OS=Leishmania chagasi GN... [more]
RL11_TETTH2.850e-5273.4860S ribosomal protein L11 OS=Tetrahymena thermophi... [more]
RL11_CHLRE2.850e-5275.7860S ribosomal protein L11 OS=Chlamydomonas reinhar... [more]
RL11_LEIMA3.722e-5275.1860S ribosomal protein L11 OS=Leishmania major GN=R... [more]
RL11_SPOFR4.550e-5079.2060S ribosomal protein L11 OS=Spodoptera frugiperda... [more]
RL11_TOXCA5.756e-4578.9560S ribosomal protein L11 (Fragment) OS=Toxocara c... [more]
RL11_ENCCU1.852e-4366.9360S ribosomal protein L11 OS=Encephalitozoon cunic... [more]
RL5_PYRKO1.921e-3252.2750S ribosomal protein L5P OS=Pyrococcus kodakaraen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-189 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509681 ID=CF509681; Name=CF509681; organism=Citrus sinensis; type=EST; length=453bp
CTGAGCAGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGA
AGAAACTTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTC
AACATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGT
GCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACA
CTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGTG
ACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGT
GAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTG
GCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCC
ACTGGAATTTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTA
TCG
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