CF509681

Overview
NameCF509681
Unique NameCF509681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METBU (50S ribosomal protein L5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.412e-27
Identity = 62/133 (46.62%), Postives = 87/133 (65.41%), Query Frame = 2
Query:   56 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            +SNPMR  KV+K+V+++ VGESG  L  A  +LE ++GQT V S A+ T+ +F I++ E I C VT+RG+ A   LE+ L + E  L    F   G   FG++EH D  G++YDP+ GI+GMD  VV+ RPGY
Sbjct:    1 MSNPMRNPKVEKVVVHMGVGESGQHLVDAEGILETITGQTVVRSYAKRTLPAFTIKKGEPIGCKVTLRGEAAEGFLETSLGIVEKRLNESQFDIFGNVSFGVEEHTDYPGMRYDPNIGIFGMDITVVVNRPGY 133          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METVS (50S ribosomal protein L5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.069e-27
Identity = 64/133 (48.12%), Postives = 84/133 (63.16%), Query Frame = 2
Query:   65 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E L+GQ PV + A+ T  +FGIR+   I   VT+RG  A + LE+     KV    L   +F   G F FG+ EHID  G KYDP+ GIYGMD  V  E+PGY
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGY 143          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METVA (50S ribosomal protein L5P OS=Methanococcus vannielii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 7.069e-27
Identity = 64/133 (48.12%), Postives = 84/133 (63.16%), Query Frame = 2
Query:   65 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E L+GQ PV + A+ T  +FGIR+   I   VT+RG  A + LE+     KV    L   +F   G F FG+ EHID  G KYDP+ GIYGMD  V  E+PGY
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGY 143          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METMP (50S ribosomal protein L5P OS=Methanococcus maripaludis GN=rpl5p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.057e-26
Identity = 63/133 (47.37%), Postives = 85/133 (63.91%), Query Frame = 2
Query:   65 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  +FGIR+   I   VT+RG KA + L+   +  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E+ GY
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKKAEEFLKNAFTAFKACGKTLFASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDICVTFEKSGY 143          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_SULTO (50S ribosomal protein L5P OS=Sulfolobus tokodaii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26
Identity = 56/139 (40.29%), Postives = 91/139 (65.47%), Query Frame = 2
Query:   38 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            M +E +  NPMR+++++K+ +NI VGE+G+RL +A ++L++L+G  PV++ A+ T+R FG+R+   I   VT+RG KA + L   L    + +   +F + G   FGI EH+ + G +YDP  GI+GMD  + L RPG+
Sbjct:    1 MMAETQTVNPMRKLRLEKVTVNIGVGEAGERLQKAYQLLQELTGVKPVYTIAKRTIREFGVRKGAPIGVKVTLRGKKAEEFLNKVLAAVGHRIKASSFDEYGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGF 139          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_NITMS (50S ribosomal protein L5P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26
Identity = 60/131 (45.80%), Postives = 88/131 (67.18%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            +PM++I ++K+VLN+ VG+SGD +  A++ LEQ+SG+ P    A+ T R +G+R+ E I   VT+RGD A  LL+  L+ K   +  R F + G + FGI+EHID+ G+KY+PS GI G+   V L RPGY
Sbjct:    7 SPMKKISLEKVVLNMGVGKSGDVIEIASRALEQISGKKPSARNAKETQRDWGVRKGEPIGVAVTIRGDDAKALLKRLLEAKGNTVNGRAFDNFGNYSFGIREHIDIPGVKYEPSIGILGLGISVTLTRPGY 137          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METBF (50S ribosomal protein L5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26
Identity = 58/132 (43.94%), Postives = 87/132 (65.91%), Query Frame = 2
Query:   56 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPG 448
            +SN MR   V+K+++++ VGESG  L  A ++L  ++GQ  V   A+ T+ +F I++NE I C VT+RG +A Q LE+ L + +  L+R  F   G   FGI+EH D  G+KYDP+ G++GMD  VV++RPG
Sbjct:    1 MSNVMRTPVVEKVIVHMGVGESGQHLVDAEEILRNITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQQFLETALGIVDKTLVRSQFDSLGNVSFGIEEHTDFPGMKYDPNIGVFGMDVTVVIKRPG 132          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METMA (50S ribosomal protein L5P OS=Methanosarcina mazei GN=rpl5p PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.508e-26
Identity = 57/132 (43.18%), Postives = 87/132 (65.91%), Query Frame = 2
Query:   56 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPG 448
            +SNPMR   V+K+++++ VGESG  L  A ++L+ ++GQ  V   A+ T+ +F I++NE I C VT+RG +A + L +  ++ E  L R  F   G   FGI+EH D  G++YDP+ G++GMD  VVL+RPG
Sbjct:    1 MSNPMRTPMVEKVIVHMGVGESGQHLVNAEEILKTITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQEFLGTSFEIIEKTLSRAQFDSLGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPG 132          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_NANEQ (50S ribosomal protein L5P OS=Nanoarchaeum equitans GN=rpl5p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.333e-25
Identity = 60/134 (44.78%), Postives = 95/134 (70.90%), Query Frame = 2
Query:   56 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLL-ESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            + +PMR+I+++K+ LNI VGESG++L +A ++L++L+GQ PV +KA+  V  + IR    I   VT+RG+KA ++L E  L   ++++   +F+D G FGFGI E+I + G+KYDP  G+ G++ +V LERPGY
Sbjct:    1 MEHPMRKIRIEKVTLNIGVGESGEKLDKAYELLKRLTGQKPVKTKAKVRVEQWHIRPGLPIGVKVTLRGEKAYKILKEKLLPAVDFKIKASSFTDRG-FGFGIPEYIMIPGMKYDPELGLIGLEAYVTLERPGY 133          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METS3 (50S ribosomal protein L5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.333e-25
Identity = 57/131 (43.51%), Postives = 87/131 (66.41%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            NPM E+++ K  ++I VGE+G++L+RA  +LEQ+  QTPV + ++ T   FGIR+ + IAC +T+RG+KA + +E  L+     +    F   G   FGI+EHID+ G+KY+P  GI+GM+  V  E+PGY
Sbjct:    2 NPMNEVQISKATVSIGVGEAGEKLSRAITLLEQMFDQTPVKTFSKVTNPEFGIRKRQPIACKLTLRGEKADKAIEMVLEGINKNIKPTQFDAQGNLSFGIKEHIDIPGMKYNPDIGIFGMNVSVTFEKPGY 132          
The following BLAST results are available for this feature:
BLAST of CF509681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RL5_METBU5.412e-2746.6250S ribosomal protein L5P OS=Methanococcoides burt... [more]
RL5_METVS7.069e-2748.1250S ribosomal protein L5P OS=Methanococcus vanniel... [more]
RL5_METVA7.069e-2748.1250S ribosomal protein L5P OS=Methanococcus vanniel... [more]
RL5_METMP2.057e-2647.3750S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_SULTO2.686e-2640.2950S ribosomal protein L5P OS=Sulfolobus tokodaii G... [more]
RL5_NITMS2.686e-2645.8050S ribosomal protein L5P OS=Nitrosopumilus mariti... [more]
RL5_METBF2.686e-2643.9450S ribosomal protein L5P OS=Methanosarcina barker... [more]
RL5_METMA3.508e-2643.1850S ribosomal protein L5P OS=Methanosarcina mazei ... [more]
RL5_NANEQ1.333e-2544.7850S ribosomal protein L5P OS=Nanoarchaeum equitans... [more]
RL5_METS31.333e-2543.5150S ribosomal protein L5P OS=Methanobrevibacter sm... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-189 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509681 ID=CF509681; Name=CF509681; organism=Citrus sinensis; type=EST; length=453bp
CTGAGCAGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGA
AGAAACTTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTC
AACATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGT
GCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACA
CTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGTG
ACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGT
GAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTG
GCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCC
ACTGGAATTTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTA
TCG
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