CF509681
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METBU (50S ribosomal protein L5P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl5p PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 5.412e-27 Identity = 62/133 (46.62%), Postives = 87/133 (65.41%), Query Frame = 2 Query: 56 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451 +SNPMR KV+K+V+++ VGESG L A +LE ++GQT V S A+ T+ +F I++ E I C VT+RG+ A LE+ L + E L F G FG++EH D G++YDP+ GI+GMD VV+ RPGY Sbjct: 1 MSNPMRNPKVEKVVVHMGVGESGQHLVDAEGILETITGQTVVRSYAKRTLPAFTIKKGEPIGCKVTLRGEAAEGFLETSLGIVEKRLNESQFDIFGNVSFGVEEHTDYPGMRYDPNIGIFGMDITVVVNRPGY 133
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METVS (50S ribosomal protein L5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl5p PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 7.069e-27 Identity = 64/133 (48.12%), Postives = 84/133 (63.16%), Query Frame = 2 Query: 65 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451 PM++ ++QK+ +N VGE+GDRLT AKV+E L+GQ PV + A+ T +FGIR+ I VT+RG A + LE+ KV L +F G F FG+ EHID G KYDP+ GIYGMD V E+PGY Sbjct: 11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGY 143
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METVA (50S ribosomal protein L5P OS=Methanococcus vannielii GN=rpl5p PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 7.069e-27 Identity = 64/133 (48.12%), Postives = 84/133 (63.16%), Query Frame = 2 Query: 65 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451 PM++ ++QK+ +N VGE+GDRLT AKV+E L+GQ PV + A+ T +FGIR+ I VT+RG A + LE+ KV L +F G F FG+ EHID G KYDP+ GIYGMD V E+PGY Sbjct: 11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGY 143
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METMP (50S ribosomal protein L5P OS=Methanococcus maripaludis GN=rpl5p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 2.057e-26 Identity = 63/133 (47.37%), Postives = 85/133 (63.91%), Query Frame = 2 Query: 65 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451 PM++ ++QK+ +N VGE+GDRLT AKV+E+L+GQ+PV + A+ T +FGIR+ I VT+RG KA + L+ + K L +F G F FG+ EHID G KYDPS GIYGMD V E+ GY Sbjct: 11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKKAEEFLKNAFTAFKACGKTLFASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDICVTFEKSGY 143
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_SULTO (50S ribosomal protein L5P OS=Sulfolobus tokodaii GN=rpl5p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26 Identity = 56/139 (40.29%), Postives = 91/139 (65.47%), Query Frame = 2 Query: 38 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451 M +E + NPMR+++++K+ +NI VGE+G+RL +A ++L++L+G PV++ A+ T+R FG+R+ I VT+RG KA + L L + + +F + G FGI EH+ + G +YDP GI+GMD + L RPG+ Sbjct: 1 MMAETQTVNPMRKLRLEKVTVNIGVGEAGERLQKAYQLLQELTGVKPVYTIAKRTIREFGVRKGAPIGVKVTLRGKKAEEFLNKVLAAVGHRIKASSFDEYGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGF 139
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_NITMS (50S ribosomal protein L5P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl5p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26 Identity = 60/131 (45.80%), Postives = 88/131 (67.18%), Query Frame = 2 Query: 62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451 +PM++I ++K+VLN+ VG+SGD + A++ LEQ+SG+ P A+ T R +G+R+ E I VT+RGD A LL+ L+ K + R F + G + FGI+EHID+ G+KY+PS GI G+ V L RPGY Sbjct: 7 SPMKKISLEKVVLNMGVGKSGDVIEIASRALEQISGKKPSARNAKETQRDWGVRKGEPIGVAVTIRGDDAKALLKRLLEAKGNTVNGRAFDNFGNYSFGIREHIDIPGVKYEPSIGILGLGISVTLTRPGY 137
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METBF (50S ribosomal protein L5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl5p PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 2.686e-26 Identity = 58/132 (43.94%), Postives = 87/132 (65.91%), Query Frame = 2 Query: 56 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPG 448 +SN MR V+K+++++ VGESG L A ++L ++GQ V A+ T+ +F I++NE I C VT+RG +A Q LE+ L + + L+R F G FGI+EH D G+KYDP+ G++GMD VV++RPG Sbjct: 1 MSNVMRTPVVEKVIVHMGVGESGQHLVDAEEILRNITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQQFLETALGIVDKTLVRSQFDSLGNVSFGIEEHTDFPGMKYDPNIGVFGMDVTVVIKRPG 132
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METMA (50S ribosomal protein L5P OS=Methanosarcina mazei GN=rpl5p PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 3.508e-26 Identity = 57/132 (43.18%), Postives = 87/132 (65.91%), Query Frame = 2 Query: 56 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPG 448 +SNPMR V+K+++++ VGESG L A ++L+ ++GQ V A+ T+ +F I++NE I C VT+RG +A + L + ++ E L R F G FGI+EH D G++YDP+ G++GMD VVL+RPG Sbjct: 1 MSNPMRTPMVEKVIVHMGVGESGQHLVNAEEILKTITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQEFLGTSFEIIEKTLSRAQFDSLGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPG 132
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_NANEQ (50S ribosomal protein L5P OS=Nanoarchaeum equitans GN=rpl5p PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.333e-25 Identity = 60/134 (44.78%), Postives = 95/134 (70.90%), Query Frame = 2 Query: 56 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLL-ESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451 + +PMR+I+++K+ LNI VGESG++L +A ++L++L+GQ PV +KA+ V + IR I VT+RG+KA ++L E L ++++ +F+D G FGFGI E+I + G+KYDP G+ G++ +V LERPGY Sbjct: 1 MEHPMRKIRIEKVTLNIGVGESGEKLDKAYELLKRLTGQKPVKTKAKVRVEQWHIRPGLPIGVKVTLRGEKAYKILKEKLLPAVDFKIKASSFTDRG-FGFGIPEYIMIPGMKYDPELGLIGLEAYVTLERPGY 133
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METS3 (50S ribosomal protein L5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl5p PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.333e-25 Identity = 57/131 (43.51%), Postives = 87/131 (66.41%), Query Frame = 2 Query: 62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451 NPM E+++ K ++I VGE+G++L+RA +LEQ+ QTPV + ++ T FGIR+ + IAC +T+RG+KA + +E L+ + F G FGI+EHID+ G+KY+P GI+GM+ V E+PGY Sbjct: 2 NPMNEVQISKATVSIGVGEAGEKLSRAITLLEQMFDQTPVKTFSKVTNPEFGIRKRQPIACKLTLRGEKADKAIEMVLEGINKNIKPTQFDAQGNLSFGIKEHIDIPGMKYNPDIGIFGMNVSVTFEKPGY 132 The following BLAST results are available for this feature:
BLAST of CF509681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 106
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Sequences
The
following sequences are available for this feature:
EST sequence >CF509681 ID=CF509681; Name=CF509681; organism=Citrus sinensis; type=EST; length=453bpback to top |