CF509681

Overview
NameCF509681
Unique NameCF509681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_THEVO (50S ribosomal protein L5P OS=Thermoplasma volcanium GN=rpl5p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.741e-25
Identity = 61/130 (46.92%), Postives = 85/130 (65.38%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPG 448
            N M+EI + K+V+NI VG++GDRLT+AAKVLE L+G  P  + A+ +VR F IR+   I   VT+R D A+  L   L VK+Y++   +F   G   FGI ++ D  G+KYDP  GI+GMD  +VL+R G
Sbjct:    2 NQMQEIIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKPTQTLAKKSVRDFNIRKRLPIGVKVTLRKDDAVNFLNKALYVKDYKIPDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGMDVAIVLKRRG 131          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METM7 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.741e-25
Identity = 63/133 (47.37%), Postives = 83/133 (62.41%), Query Frame = 2
Query:   65 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  +FGIR+   I   VT+RG  A + L    S  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E+ GY
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFSAFKTCGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDICVTFEKSGY 143          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METM6 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.274e-25
Identity = 62/133 (46.62%), Postives = 83/133 (62.41%), Query Frame = 2
Query:   65 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  +FGIR+   I   VT+RG  A + L    +  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E+ GY
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFTAFKTSGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDVCVTFEKSGY 143          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METM5 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.616e-25
Identity = 60/133 (45.11%), Postives = 84/133 (63.16%), Query Frame = 2
Query:   65 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  ++GIR+   I   VT+RG  A + L+   +  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  ++ GY
Sbjct:   11 PMKKPRIQKITVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAYGIRKKLPIGLKVTLRGKNAEEFLKNAFTAFKACGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDVCVTFDKAGY 143          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_PICTO (50S ribosomal protein L5P OS=Picrophilus torridus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.129e-24
Identity = 59/130 (45.38%), Postives = 80/130 (61.54%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPG 448
            N MREI + K+V+NI VG +G+RL RAAKVLE L+   P F+ A+ TVR F IR+   I   VT+R D A+  L+     K+Y++   +F   G   FGI ++ D  G+KYDP  GI+GMD  +V  R G
Sbjct:    7 NSMREIVIDKVVVNIGVGAAGERLNRAAKVLELLTHHKPAFTSAKRTVRDFNIRKGLNIGVKVTLRKDDALSFLKEAFYAKDYKIPVYSFDKNGNAYFGISDYTDFKGMKYDPDIGIFGMDIAIVFRRRG 136          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METST (50S ribosomal protein L5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.129e-24
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            N M++  + K  +NI VGE G++LTRA K++E L  Q PV + ++ T   FGIR+ + IAC VT+RG+KA +++   L   E  +    F   G   FGI+EHID+ G+KYDP  GI+GMD  V  ++PG+
Sbjct:    2 NVMQKPFIAKATINIGVGEGGEKLTRAEKLIETLVDQKPVRTYSKVTNPEFGIRKKQPIACKVTLRGEKADKIISMVLSGLENRIKASQFDKEGNVSFGIREHIDIPGVKYDPDIGIFGMDVSVTFQKPGH 132          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METAC (50S ribosomal protein L5P OS=Methanosarcina acetivorans GN=rpl5p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.129e-24
Identity = 57/128 (44.53%), Postives = 82/128 (64.06%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPG 448
            MR   V+K+++++ VGESG  L  A  +L  ++GQ  V   A+ T+ +F I++NE I C VT+RG KA + LE+ L + E  L R  F   G   FGI+EH D  G++YDP+ G++GMD  VVL+RPG
Sbjct:    1 MRTPIVEKVIVHMGVGESGQHLVNAEDILRNITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQKAQEFLETALGIVEKTLNRSQFDSFGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPG 128          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_SULAC (50S ribosomal protein L5P OS=Sulfolobus acidocaldarius GN=rpl5p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.474e-24
Identity = 54/136 (39.71%), Postives = 85/136 (62.50%), Query Frame = 2
Query:   47 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            E K  N MR + + K+ +NI VGESG+RL +A +++++L+G  PV++K R ++R FG+R+   I    T+R   A++ L+  L    + L + +F + G   FGI EH+ + G +YDP  GI+GMD  + L RPGY
Sbjct:    5 EAKKENVMRRVVLDKVTVNIGVGESGERLQKAYQLVQELTGVKPVYTKGRKSIREFGVRKGAPIGVKATLRRQAAVEFLKKVLPAVNFRLKQSSFDNYGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGY 140          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_THEAC (50S ribosomal protein L5P OS=Thermoplasma acidophilum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.925e-24
Identity = 57/130 (43.85%), Postives = 82/130 (63.08%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPG 448
            NPM E+ + K+V+NI VG++GDRLT+AAKVLE L+G     + A+ ++R F IR+   I   VT+R   AM+ L+    VK+Y++   +F   G   FGI ++ D  G+KYDP  GI+GMD  +V  R G
Sbjct:    2 NPMEEVIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKATNTLAKKSIRDFNIRKRLPIGVKVTLRKKDAMEFLQKAFYVKDYKITDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGMDVAIVFRRRG 131          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_CENSY (50S ribosomal protein L5P OS=Cenarchaeum symbiosum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.925e-24
Identity = 58/133 (43.61%), Postives = 83/133 (62.41%), Query Frame = 2
Query:   56 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            ++  MR+I ++K+VLN+ VG+SG+ +  A + L ++SG+ P    A  T R FG+R+ E I   VT+RG+ A  L     + K  ++  R+F D G F FGI EHID+ GIKYDP  GI G+D  + L RPGY
Sbjct:    1 MAGDMRKITLEKVVLNMGVGQSGNAVEVAKRALGEISGKKPCGRDAHETQRDFGVRKGEPIGAAVTIRGEDAGALARRLFEAKGGQVKGRSFDDFGNFSFGIGEHIDIPGIKYDPGIGILGLDVCMTLSRPGY 133          
The following BLAST results are available for this feature:
BLAST of CF509681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RL5_THEVO1.741e-2546.9250S ribosomal protein L5P OS=Thermoplasma volcaniu... [more]
RL5_METM71.741e-2547.3750S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METM62.274e-2546.6250S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METM56.616e-2545.1150S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_PICTO1.129e-2445.3850S ribosomal protein L5P OS=Picrophilus torridus ... [more]
RL5_METST1.129e-2443.5150S ribosomal protein L5P OS=Methanosphaera stadtm... [more]
RL5_METAC1.129e-2444.5350S ribosomal protein L5P OS=Methanosarcina acetiv... [more]
RL5_SULAC1.474e-2439.7150S ribosomal protein L5P OS=Sulfolobus acidocalda... [more]
RL5_THEAC1.925e-2443.8550S ribosomal protein L5P OS=Thermoplasma acidophi... [more]
RL5_CENSY1.925e-2443.6150S ribosomal protein L5P OS=Cenarchaeum symbiosum... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-189 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509681 ID=CF509681; Name=CF509681; organism=Citrus sinensis; type=EST; length=453bp
CTGAGCAGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGA
AGAAACTTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTC
AACATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGT
GCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACA
CTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGTG
ACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGT
GAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTG
GCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCC
ACTGGAATTTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTA
TCG
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