CF509681

Overview
NameCF509681
Unique NameCF509681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_PYRAE (50S ribosomal protein L5P OS=Pyrobaculum aerophilum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.284e-24
Identity = 56/130 (43.08%), Postives = 87/130 (66.92%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPG 448
            +PM+ I ++K+V+NI VG SG++L +AA +L++L+G  P   +A+ +++ FGIR+ E I   VT+R D+A+  L   L+     + + +F D G   FGI+EHI L G+KYDP+ GI+GMD  V L +PG
Sbjct:   13 HPMQRIYIEKVVVNIGVGASGEKLEKAAGLLKELTGAEPSRRRAKKSIKDFGIRKGEPIGVAVTLRRDQAVNFLMRALQAVNNRVKKTSFDDRGNVCFGIKEHILLPGVKYDPAVGIWGMDVCVKLAKPG 142          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METB6 (50S ribosomal protein L5P OS=Methanoregula boonei (strain 6A8) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.315e-24
Identity = 52/128 (40.62%), Postives = 81/128 (63.28%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPG 448
            MR++ + K+V+++ VGESG++L +A  +++ ++ QTP+ S A+ T  +F IR+   I C VT+RG  A   +++ L +    +    F  +G F FGI+EH D  G+ YDP  GI+GMD  VVLER G
Sbjct:    1 MRDVHIDKVVVHMGVGESGEKLVKAENIMKTITKQTPIRSVAKMTQPAFNIRKGAPIGCKVTLRGKPAEDFIKTSLNIVNKTIFESQFDKSGNFSFGIEEHTDFPGMSYDPQIGIFGMDINVVLERNG 128          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METMJ (50S ribosomal protein L5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.248e-23
Identity = 56/128 (43.75%), Postives = 83/128 (64.84%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPG 448
            M++I + K+V+++ VGESG+RL +A  +++Q++GQ PV + A+ T  +FGIR+   I C VT+R + A + + + L + E  L    F  TG   FGI+EH D  G+ YDP+ GIYGMD  VVLE  G
Sbjct:    4 MKDIYIDKVVVHMGVGESGERLVKAEDLVKQITGQKPVRTIAKRTQPAFGIRKGAPIGCKVTLRRENAEKFITTALDIIERRLAPSQFDRTGNVSFGIEEHTDFPGMSYDPTIGIYGMDVNVVLEYKG 131          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_METLZ (50S ribosomal protein L5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.248e-23
Identity = 60/126 (47.62%), Postives = 78/126 (61.90%), Query Frame = 2
Query:   83 VQKLVLNISVGESGDRLTRAAKVLEQLS-GQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE--LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPG 448
            V K+V+++ VGE+G+RL  A  ++  L+ G  P+ S AR T+ +FGIR+ + I C  T+RG KAM  LE  LK    E  L  R F  TG FGFGI+EH D  G  YDP  GIYGMD   V+E+ G
Sbjct:    9 VAKVVVHMGVGEAGERLVNAENIMADLTKGAKPIRSYARNTLPAFGIRKGQPIGCKATLRGKKAMDFLEMALKTYAVENVLHTRQFDATGNFGFGIEEHTDFPGQAYDPKIGIYGMDIIAVIEKKG 134          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_META3 (50S ribosomal protein L5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.780e-23
Identity = 57/133 (42.86%), Postives = 81/133 (60.90%), Query Frame = 2
Query:   65 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            PM + +++K+ +N+ VGESGD+L  A KV+ +++GQ PV + A+ T  +F IR+   I   +T+RG KA + L+   +       +L   +F   G F FGI EHID    KYDPS GIYGMD  V  E+PGY
Sbjct:   11 PMSKPRIEKVTVNMGVGESGDKLLTAEKVVSEITGQKPVRTLAKQTNPAFNIRKKLPIGLKITLRGKKAEEFLKDAFTAFTASGKQLFTYSFDKRGNFSFGIPEHIDFPNQKYDPSVGIYGMDICVTFEKPGY 143          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_CALMQ (50S ribosomal protein L5P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 8.088e-23
Identity = 54/131 (41.22%), Postives = 85/131 (64.89%), Query Frame = 2
Query:   62 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            +PMR I +  + +N+ +G+SG+RL +AAKV+ +L+G+TP +  A  +++ FGIRR E I   VT+R ++A+  L   L   ++ L   +F + G   FGI+EHI + G +YDP+ GI+G D  V L RPG+
Sbjct:   30 HPMRRIFIWSVAVNMGIGQSGERLEKAAKVMSELTGRTPSYRLAHKSIKDFGIRRGEPIGLLVTLRRNEAVWFLLRALAAVDFTLREESF-NAGNVSFGIREHILVPGSRYDPALGIFGFDVAVTLARPGF 159          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_HALMA (50S ribosomal protein L5P OS=Haloarcula marismortui GN=rpl5p PE=1 SV=4)

HSP 1 Score: 102.834 bits (255), Expect = 6.847e-22
Identity = 54/129 (41.86%), Postives = 80/129 (62.02%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            MRE +++K+V+++ +G  G  L  A  +L +++GQ PV +KA+ TV  F IR  + I   VT+R + A + L++ L +   EL    F DTG F FG++EH +    +YDPS GIYG+D  V L RPGY
Sbjct:   14 MREPRIEKVVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKRTVGEFDIREGDPIGAKVTLRDEMAEEFLQTALPLA--ELATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRPGY 140          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_HALSA (50S ribosomal protein L5P OS=Halobacterium salinarium GN=rpl5p PE=1 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 8.942e-22
Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            MRE +++K+V+++ VG+ G  L  A  +LE ++GQ  V +KA+     FG+R+ + I   VT+R D A+  LE  L   + +  RR F +TG   FGI+EH D    +YDP+ GIYGMD  V L RPGY
Sbjct:   12 MREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGY 138          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_HALS3 (50S ribosomal protein L5P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 8.942e-22
Identity = 55/129 (42.64%), Postives = 79/129 (61.24%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            MRE +++K+V+++ VG+ G  L  A  +LE ++GQ  V +KA+     FG+R+ + I   VT+R D A+  LE  L   + +  RR F +TG   FGI+EH D    +YDP+ GIYGMD  V L RPGY
Sbjct:   12 MREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGY 138          
BLAST of CF509681 vs. ExPASy Swiss-Prot
Match: RL5_NATPD (50S ribosomal protein L5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.992e-21
Identity = 51/129 (39.53%), Postives = 82/129 (63.57%), Query Frame = 2
Query:   68 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGY 451
            MRE  V+K+V+++ VG  G+ L +A ++LE++  Q PV + A+ T++ F +R  + I    T+RG+ A + LE+ L + + +  R+ F +TG F FG++EH +    +YDP  GIYG+D  V L RPGY
Sbjct:   13 MREPTVEKVVVHMGVGRGGEPLAQAEEILEEIVEQQPVRTTAQKTIQDFEVREGDPIGTKATLRGEDAEEFLETALPLADID--RKQFDETGNFSFGVEEHTEFPSQEYDPQIGIYGLDVTVNLVRPGY 139          
The following BLAST results are available for this feature:
BLAST of CF509681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
RL5_PYRAE3.284e-2443.0850S ribosomal protein L5P OS=Pyrobaculum aerophilu... [more]
RL5_METB67.315e-2440.6350S ribosomal protein L5P OS=Methanoregula boonei ... [more]
RL5_METMJ1.248e-2343.7550S ribosomal protein L5P OS=Methanoculleus marisn... [more]
RL5_METLZ1.248e-2347.6250S ribosomal protein L5P OS=Methanocorpusculum la... [more]
RL5_META32.780e-2342.8650S ribosomal protein L5P OS=Methanococcus aeolicu... [more]
RL5_CALMQ8.088e-2341.2250S ribosomal protein L5P OS=Caldivirga maquilinge... [more]
RL5_HALMA6.847e-2241.8650S ribosomal protein L5P OS=Haloarcula marismortu... [more]
RL5_HALSA8.942e-2242.6450S ribosomal protein L5P OS=Halobacterium salinar... [more]
RL5_HALS38.942e-2242.6450S ribosomal protein L5P OS=Halobacterium salinar... [more]
RL5_NATPD1.992e-2139.5350S ribosomal protein L5P OS=Natronomonas pharaoni... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-189 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509681 ID=CF509681; Name=CF509681; organism=Citrus sinensis; type=EST; length=453bp
CTGAGCAGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGA
AGAAACTTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTC
AACATCTCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGT
GCTGGAGCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACA
CTGTTCGGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGTG
ACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGT
GAAGGAATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTG
GCTTTGGTATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCC
ACTGGAATTTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTA
TCG
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