CF509699

Overview
NameCF509699
Unique NameCF509699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS7_PYRAB (30S ribosomal protein S7P OS=Pyrococcus abyssi GN=rps7p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.909e-24
Identity = 64/166 (38.55%), Postives = 92/166 (55.42%), Query Frame = 3
Query:  207 YDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRN----------------NGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            +++K+  RW+ EDV+V D SL  YI ++       +PHT GR++ K F KA   IVERL N +M  G +                N KK+ A  +VK A +II   T +NPIQV+V A+ N+ PRED T +   G+    AVDISP+RR++ A+  +  GA    +
Sbjct:   13 HEIKVMGRWSTEDVEVRDPSLKPYINLEPR----LLPHTHGRHAKKHFGKANVHIVERLINKIMRSGGSHYKVAGHFMRREHRSLNSKKVKAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDISPMRRLDVALRNIALGASAKCY 174          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS7_HALWD (30S ribosomal protein S7P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps7p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24
Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = 3
Query:  189 DPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            D      + KLF  W   +++  D S   YI V      T + HT GR++ K+F K++  +VERL N LM    N G K   + IV+ A + IH  T++NP+QV+V  V N+ PRE+  R+   G+   QAVD++P RRV+QA+  +  G +  ++
Sbjct:   37 DTDTASANAKLFGEWDVSEIEYEDPSTQRYITV------TPIAHTMGRHAAKQFEKSKISVVERLINRLMQTEDNTGHKQKTMNIVEDAFDTIHNRTEENPVQVLVRGVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIADGTQRGSY 186          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.245e-23
Identity = 57/146 (39.04%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  219 LFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            LFN++    V+++D  +  YI V++A N     HT GR+S     K    +VERL N LM   +  GKK  A +I + A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F
Sbjct:    2 LFNKYDVNAVEIHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRSEKWTGKKYSAYKITEEAFQIIAEKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASF 143          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.933e-23
Identity = 58/146 (39.73%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  219 LFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            LF+++    V+V+D  +  YI V++A N     HT GR+S     K    +VERL N LM   +  GKK  A +I K A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  + TGA  ++F
Sbjct:    2 LFDKYDVNSVEVHDPGMVKYINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRTEKWTGKKYSAYKITKDAFDIIADKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASF 143          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS7_NANEQ (30S ribosomal protein S7P OS=Nanoarchaeum equitans GN=rps7p PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.901e-22
Identity = 63/154 (40.91%), Postives = 83/154 (53.90%), Query Frame = 3
Query:  213 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGR-----------NNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGA 641
            +KLF RW +EDV V D  L DYI ++       +P++ GR+   RF KA+ PI+ERL   LM  G              GKK  A +I+    EII   T QNP++V V A+ N+ PRE+ T I   G    +AVD SP RRV+ AI  +  GA
Sbjct:    3 MKLFGRWDYEDVTVEDPGLRDYINLKPM----LIPYSGGRHQKHRFGKAKIPIIERLAGRLMTSGHLGKKHKWTSEHQTGKKYNAYKIIIRTFEIIEKRTKQNPLKVFVKAIENAAPREETTTIEYGGARYPKAVDCSPQRRVDLAIRHMVWGA 152          
BLAST of CF509699 vs. ExPASy Swiss-Prot
Match: RS7_PICTO (30S ribosomal protein S7P OS=Picrophilus torridus GN=rps7p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.223e-22
Identity = 54/149 (36.24%), Postives = 87/149 (58.39%), Query Frame = 3
Query:  210 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAF 656
            D  +  ++    +Q++D+ L+ YI +    N+ +  HT GRYS     K     +ERL N LM   +  GKK  A R++K A EI+   T QNP+QV+++A+ NS PRE+ TR+   G+   ++VD+SP RR+++A+  +  GA   +F
Sbjct:    2 DRLIMGKYDVSGIQIHDMGLAKYINL----NSYFNLHTGGRYSNYSAGKRNVNTIERLLNKLMRTEKWTGKKYSAYRVLKEAFEIVEQKTKQNPVQVLINAIENSAPREEVTRLKYGGIAVPKSVDVSPSRRLDEALRNICIGATSKSF 146          
The following BLAST results are available for this feature:
BLAST of CF509699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_PYRAB5.909e-2438.5530S ribosomal protein S7P OS=Pyrococcus abyssi GN=... [more]
RS7_HALWD7.717e-2436.5430S ribosomal protein S7P OS=Haloquadratum walsbyi... [more]
RS7_THEAC2.245e-2339.0430S ribosomal protein S7P OS=Thermoplasma acidophi... [more]
RS7_THEVO2.933e-2339.7330S ribosomal protein S7P OS=Thermoplasma volcaniu... [more]
RS7_NANEQ1.901e-2240.9130S ribosomal protein S7P OS=Nanoarchaeum equitans... [more]
RS7_PICTO7.223e-2236.2430S ribosomal protein S7P OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-207 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509699 ID=CF509699; Name=CF509699; organism=Citrus sinensis; type=EST; length=657bp
GAGCGGCAGCCGATTCTTATTATTCCCTTTTCAAACCCCTTCAGACAAAC
TAACGCACGCTTTCTTTTTCTTCCGCTTTCTTCTCCATCGCTGATCATCT
TGATTGCTTTTTTAGTTCGAAAAACATTGTCTTTTAATATTTTGTTGTGT
TGGTGAGAATGGCGACTGCTGTAGTGACACAATCTCAAGACCCATCACAG
CCTCAATACGATGTGAAACTCTTCAATAGGTGGACTTTCGAGGATGTTCA
GGTCAATGACATTTCATTGAGTGATTATATTGGAGTCCAAGCAGCAAAAA
ATGCAACCTATGTACCTCACACAGCTGGGAGGTACTCAGTGAAGCGGTTT
AGGAAGGCACAGTGCCCAATTGTTGAGAGGCTCACAAACTCACTGATGAT
GCATGGAAGAAACAATGGCAAGAAATTGATGGCCGTCAGGATTGTCAAGC
ACGCCATGGAAATCATTCACCTTTTGACCGACCAGAACCCAATTCAGGTC
ATTGTTGATGCTGTCATCAACAGTGGTCCAAGGGAAGACGCTACCCGCAT
TGGATCTGCTGGTGTTGTTAGGCGTCAGGCAGTTGATATTTCCCCATTGC
GCCGTGTGAATCAAGCAATCTATTTGCTCACCACTGGTGCTCGTGAATCC
GCTTTCC
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