CF509733
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19 Identity = 64/152 (42.11%), Postives = 85/152 (55.92%), Query Frame = 1 Query: 91 WAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 495 WAML LG + E L G+ W AG EG YLG P +++ I +V+++G IE R DP +YPGG F DPLGLA DP+ A +++ EIK+ RLAM + GF VQA+VTGKGP+ N A HL+DP++ Sbjct: 117 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19 Identity = 64/152 (42.11%), Postives = 85/152 (55.92%), Query Frame = 1 Query: 91 WAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 495 WAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G +E R DP +YPGG F DPLGLA DPE A L++ E+K+ RLAM + GF VQA+VTGKGPL N A HL+ P++ Sbjct: 102 WAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVN 249
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19 Identity = 70/181 (38.67%), Postives = 93/181 (51.38%), Query Frame = 1 Query: 4 LTCSPRRFSRTLKSLVCRGSVSVSSFMDCWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 495 L+ P F++ + V G WAML LG + E L G+ W G EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA D E A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 83 LSADPETFAKNRELEVIHGR---------WAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19 Identity = 70/182 (38.46%), Postives = 96/182 (52.75%), Query Frame = 1 Query: 4 LTCSPRRFSRT--LKSLVCRGSVSVSSFMDCWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 492 L+ P F+R L+ + CR WAML LG + E L+ G+ W AG EG YLG P +++ + +V+++G IE R LD ++YPGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGP+ N H++DP+ Sbjct: 84 LSADPETFARNRELEVIHCR-----------WAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 250
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.089e-18 Identity = 61/150 (40.67%), Postives = 82/150 (54.67%), Query Frame = 1 Query: 97 MLATLGALTVEWLT---------GITWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 489 +L LG +T E L W AG +G +YLG P +I + ++V+++G +E R LDP LYPG + FDPLGLA DP+ A L++ EIK+ RLAM A LGF VQA+VTGKGP+ N HL++P Sbjct: 113 LLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANP 258 HSP 2 Score: 23.8682 bits (50), Expect = 1.089e-18 Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 3 Query: 54 QRFRECELIH---GLLGHVG 104 +R+RE ELIH GLLG +G Sbjct: 99 KRYRELELIHARCGLLGALG 118
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.690e-18 Identity = 64/152 (42.11%), Postives = 85/152 (55.92%), Query Frame = 1 Query: 91 WAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 495 WAML LG + E L+ G+ W AG EG YLG P +++ I +V+++G +E R +DP LYPGG F DPLGLA PE A L++ E+K+ RLAM + GF V A+VTGKGPL N A HL+DP++ Sbjct: 67 WAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVN 214
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18 Identity = 69/183 (37.70%), Postives = 98/183 (53.55%), Query Frame = 1 Query: 4 LTCSPRRFS--RTLKSLVCRGSVSVSSFMDCWAMLATLGALTVEWLT--GITWQDAG------KVELVEGSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 495 L+ P F+ R L+ + CR WAML LG + E L G+ + +AG ++ G YLG P +L+ I +V+++G +E R +DP LYPGG F DPLGLA P+ A L++ EIK+ RLAM + GF VQA+VTGKGPL + A H++DP++ Sbjct: 85 LSADPETFAKNRELEVIHCR-----------WAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSF-DPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVN 252
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18 Identity = 62/151 (41.06%), Postives = 87/151 (57.62%), Query Frame = 1 Query: 91 WAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 492 WAML LG + E L+ G+ W AG EG YLG P ++ IW ++V+++G++E R LD ++YPGG F DPLGLA DP+ A L++ E+K+ RLAM + GF VQA+VTGKGP+ N H++DP+ Sbjct: 102 WAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18 Identity = 62/151 (41.06%), Postives = 87/151 (57.62%), Query Frame = 1 Query: 91 WAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 492 WAML LG + E L+ G+ W AG EG YLG P ++ IW ++V+++G++E R LD ++YPGG F DPLGLA DP+ A L++ E+K+ RLAM + GF VQA+VTGKGP+ N H++DP+ Sbjct: 102 WAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18 Identity = 67/152 (44.08%), Postives = 87/152 (57.24%), Query Frame = 1 Query: 91 WAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLG-QPLPFSITTL-IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 495 WAML LG + E L G+ +W AG EG YLG Q L + + L IW +V+++G +E R DP +YPGG F DPL LA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL++P++ Sbjct: 84 WAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVN 231 The following BLAST results are available for this feature:
BLAST of CF509733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF509733 ID=CF509733; Name=CF509733; organism=Citrus sinensis; type=EST; length=664bpback to top |