CF509733

Overview
NameCF509733
Unique NameCF509733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 64/152 (42.11%), Postives = 85/152 (55.92%), Query Frame = 1
Query:   91 WAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 495
            WAML  LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G IE  R          DP   +YPGG F DPLGLA DP+  A +++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  117 WAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF-DPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264          
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 64/152 (42.11%), Postives = 85/152 (55.92%), Query Frame = 1
Query:   91 WAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 495
            WAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+ P++
Sbjct:  102 WAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVN 249          
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 70/181 (38.67%), Postives = 93/181 (51.38%), Query Frame = 1
Query:    4 LTCSPRRFSRTLKSLVCRGSVSVSSFMDCWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 495
            L+  P  F++  +  V  G          WAML  LG +  E L   G+      W   G     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA D E  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   83 LSADPETFAKNRELEVIHGR---------WAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF-DPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250          
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.905e-19
Identity = 70/182 (38.46%), Postives = 96/182 (52.75%), Query Frame = 1
Query:    4 LTCSPRRFSRT--LKSLVCRGSVSVSSFMDCWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 492
            L+  P  F+R   L+ + CR           WAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ +   +V+++G IE  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:   84 LSADPETFARNRELEVIHCR-----------WAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 250          
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.089e-18
Identity = 61/150 (40.67%), Postives = 82/150 (54.67%), Query Frame = 1
Query:   97 MLATLGALTVEWLT---------GITWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 489
            +L  LG +T E L             W  AG     +G  +YLG P      +I   + ++V+++G +E  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLAM A LGF VQA+VTGKGP+ N   HL++P
Sbjct:  113 LLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANP 258          

HSP 2 Score: 23.8682 bits (50), Expect = 1.089e-18
Identity = 12/20 (60.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:   54 QRFRECELIH---GLLGHVG 104
            +R+RE ELIH   GLLG +G
Sbjct:   99 KRYRELELIHARCGLLGALG 118          
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.690e-18
Identity = 64/152 (42.11%), Postives = 85/152 (55.92%), Query Frame = 1
Query:   91 WAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 495
            WAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA  PE  A L++ E+K+ RLAM +  GF V A+VTGKGPL N A HL+DP++
Sbjct:   67 WAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVN 214          
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.207e-18
Identity = 69/183 (37.70%), Postives = 98/183 (53.55%), Query Frame = 1
Query:    4 LTCSPRRFS--RTLKSLVCRGSVSVSSFMDCWAMLATLGALTVEWLT--GITWQDAG------KVELVEGSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 495
            L+  P  F+  R L+ + CR           WAML  LG +  E L   G+ + +AG      ++    G  YLG P      +L+ I   +V+++G +E  R         +DP   LYPGG F DPLGLA  P+  A L++ EIK+ RLAM +  GF VQA+VTGKGPL + A H++DP++
Sbjct:   85 LSADPETFAKNRELEVIHCR-----------WAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSF-DPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVN 252          
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 62/151 (41.06%), Postives = 87/151 (57.62%), Query Frame = 1
Query:   91 WAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 492
            WAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  102 WAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.882e-18
Identity = 62/151 (41.06%), Postives = 87/151 (57.62%), Query Frame = 1
Query:   91 WAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 492
            WAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  102 WAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of CF509733 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.916e-18
Identity = 67/152 (44.08%), Postives = 87/152 (57.24%), Query Frame = 1
Query:   91 WAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLG-QPLPFSITTL-IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 495
            WAML  LG +  E L   G+     +W  AG     EG   YLG Q L  + + L IW  +V+++G +E  R          DP   +YPGG F DPL LA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL++P++
Sbjct:   84 WAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVN 231          
The following BLAST results are available for this feature:
BLAST of CF509733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB2A_PYRPY5.807e-1942.11Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB23_SOYBN5.807e-1942.11Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_HORVU7.584e-1938.67Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_TOBAC9.905e-1938.46Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB2_DUNSA1.089e-1840.67Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PEA1.690e-1842.11Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB21_WHEAT2.207e-1837.70Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSJ2.882e-1841.06Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.882e-1841.06Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SOYBN4.916e-1844.08Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-241 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-80_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509733 ID=CF509733; Name=CF509733; organism=Citrus sinensis; type=EST; length=664bp
CCTCTGACATGCAGTCCACGCCGCTTCAGCCGTACACTGAAGTCTTTGGT
CTGCAGAGGTTCCGTGAGTGTGAGCTCATTCATGGACTGTTGGGCCATGT
TGGCTACTCTCGGTGCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGG
CAAGACGCTGGCAAGGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCA
ACCACTTCCATTCTCAATAACAACGTTGATATGGATTGAGGTTTTGGTAA
TTGGCTACATTGAGTTCCAAAGAAACTCAGAGCTTGACCCGGAGAAGAGA
CTCTACCCGGGAGGAAAGTTTTTTGATCCTCTGGGCTTGGCCGCTGACCC
GGAAAAGAAAGCCACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTG
CCATGGTTGCATTCCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAA
GGCCCTCTCAACAACTGGGCTACCCACTTGAGCGATCCTCTTCACACAAC
CATTCTTGACACCTTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTT
GGCAGTTGGCACTATTGGTATTATTATTATTATATGCGCCTATCTTGTAA
AAAGAATTATAACATTTGACAGCTTAAGGGGAATGCTATGGCTTCATATT
TTGAAGTCATTTCA
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