CF509788

Overview
NameCF509788
Unique NameCF509788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length318
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_USTMA (3-isopropylmalate dehydratase OS=Ustilago maydis GN=LEU1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.368e-19
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 2 
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  +L K    +   +DGE+   + +KD+IL IIG I  AG T   +E+ G+T+  LSME RM++CNM +EAG +
Sbjct:  135 DSHTSTHGAFGALAFGIGTSEVEHVLATQTLLQKRAKNMLIQVDGELSQGVTSKDIILHIIGLIGTAGGTGHVIEYAGSTIRSLSMEARMSICNMSIEAGAR 236
[Close]
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_NITEU (3-isopropylmalate dehydratase large subunit OS=Nitrosomonas europaea GN=leuC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.368e-19
Identity = 46/102 (45.10%), Postives = 65/102 (63.73%), Query Frame = 2 
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAF   A GIG ++   VL T  ++ +   T+   ++G++P  + AKD+ L +IGEI  AG T  ++EF G+ +  LSME RMTLCNM +EAG +
Sbjct:  130 DSHTSTHGAFACLAFGIGTSEVEHVLATQCLVARKSKTMLVRVEGDLPPGVTAKDIALAVIGEIGTAGGTGYAIEFAGSAIRSLSMEGRMTLCNMAIEAGAR 231
[Close]
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ACIF5 (3-isopropylmalate dehydratase large subunit OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=leuC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.368e-19
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 2 
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GA G  A GIG T+   VL T  +  +   ++R  ++GE+ + + AKDL+L IIG I  AG T  ++EF G  V  LS+E RMTLCNM +EAG +
Sbjct:  129 DSHTATHGALGALAFGIGTTEVEHVLATQCLWARKSRSMRIWVEGELGNGVTAKDLVLAIIGRIGTAGGTGYAIEFAGPAVHALSVEGRMTLCNMAIEAGAR 230
[Close]
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ACIF2 (3-isopropylmalate dehydratase large subunit OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=leuC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.368e-19
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 2 
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GA G  A GIG T+   VL T  +  +   ++R  ++GE+ + + AKDL+L IIG I  AG T  ++EF G  V  LS+E RMTLCNM +EAG +
Sbjct:  129 DSHTATHGALGALAFGIGTTEVEHVLATQCLWARKSRSMRIWVEGELGNGVTAKDLVLAIIGRIGTAGGTGYAIEFAGPAVHALSVEGRMTLCNMAIEAGAR 230
[Close]
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_XANOR (3-isopropylmalate dehydratase large subunit OS=Xanthomonas oryzae pv. oryzae GN=leuC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.623e-19
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 2 
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    L+  ++G +P  + AKD++L +IG+I  AG    ++EF G+ +  LSME RMT+CNM +EAG +
Sbjct:  134 DSHTSTHGAFGALAHGIGTSEVEHVLATQCLITKKMKNLQVRVEGTLPFGVTAKDIVLAVIGKIGTAGGNGHALEFAGSAIRALSMEGRMTICNMSIEAGAR 235
[Close]
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_XANOP (3-isopropylmalate dehydratase large subunit OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=leuC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.623e-19
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 2 
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    L+  ++G +P  + AKD++L +IG+I  AG    ++EF G+ +  LSME RMT+CNM +EAG +
Sbjct:  134 DSHTSTHGAFGALAHGIGTSEVEHVLATQCLITKKMKNLQVRVEGTLPFGVTAKDIVLAVIGKIGTAGGNGHALEFAGSAIRALSMEGRMTICNMSIEAGAR 235
[Close]
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_XANOM (3-isopropylmalate dehydratase large subunit OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=leuC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.623e-19
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 2 
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    L+  ++G +P  + AKD++L +IG+I  AG    ++EF G+ +  LSME RMT+CNM +EAG +
Sbjct:  134 DSHTSTHGAFGALAHGIGTSEVEHVLATQCLITKKMKNLQVRVEGTLPFGVTAKDIVLAVIGKIGTAGGNGHALEFAGSAIRALSMEGRMTICNMSIEAGAR 235
[Close]
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_XANCP (3-isopropylmalate dehydratase large subunit OS=Xanthomonas campestris pv. campestris GN=leuC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.623e-19
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 2 
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    L+  ++G +P  + AKD++L +IG+I  AG    ++EF G+ +  LSME RMT+CNM +EAG +
Sbjct:  134 DSHTSTHGAFGALAHGIGTSEVEHVLATQCLIAKKMKNLQVRVEGTLPFGVTAKDIVLAVIGKIGTAGGNGHALEFAGSAIRALSMEGRMTICNMSIEAGAR 235
[Close]
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_XANC8 (3-isopropylmalate dehydratase large subunit OS=Xanthomonas campestris pv. campestris (strain 8004) GN=leuC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.623e-19
Identity = 45/102 (44.12%), Postives = 65/102 (63.73%), Query Frame = 2 
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    L+  ++G +P  + AKD++L +IG+I  AG    ++EF G+ +  LSME RMT+CNM +EAG +
Sbjct:  134 DSHTSTHGAFGALAHGIGTSEVEHVLATQCLIAKKMKNLQVRVEGTLPFGVTAKDIVLAVIGKIGTAGGNGHALEFAGSAIRALSMEGRMTICNMSIEAGAR 235
[Close]
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_XANAC (3-isopropylmalate dehydratase large subunit OS=Xanthomonas axonopodis pv. citri GN=leuC PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.623e-19
Identity = 44/102 (43.14%), Postives = 65/102 (63.73%), Query Frame = 2 
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    ++  ++G +P  + AKD++L +IG+I  AG    ++EF G+ +  LSME RMT+CNM +EAG +
Sbjct:  134 DSHTSTHGAFGALAHGIGTSEVEHVLATQCLIAKKMKNMQVRVEGTLPFGVTAKDIVLAVIGKIGTAGGNGHALEFAGSAIRTLSMEGRMTICNMAIEAGAR 235
The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_USTMA7.368e-1946.083-isopropylmalate dehydratase OS=Ustilago maydis G... [more]
LEUC_NITEU7.368e-1945.103-isopropylmalate dehydratase large subunit OS=Nit... [more]
LEUC_ACIF57.368e-1947.063-isopropylmalate dehydratase large subunit OS=Aci... [more]
LEUC_ACIF27.368e-1947.063-isopropylmalate dehydratase large subunit OS=Aci... [more]
LEUC_XANOR9.623e-1944.123-isopropylmalate dehydratase large subunit OS=Xan... [more]
LEUC_XANOP9.623e-1944.123-isopropylmalate dehydratase large subunit OS=Xan... [more]
LEUC_XANOM9.623e-1944.123-isopropylmalate dehydratase large subunit OS=Xan... [more]
LEUC_XANCP9.623e-1944.123-isopropylmalate dehydratase large subunit OS=Xan... [more]
LEUC_XANC89.623e-1944.123-isopropylmalate dehydratase large subunit OS=Xan... [more]
LEUC_XANAC9.623e-1943.143-isopropylmalate dehydratase large subunit OS=Xan... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-296 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bp
GTTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTG
CCACTGGCATTGGCAACACTGATGCAGGTTTTGTATTGGGCACAGGGAAA
GTCTTGCTCAAGGTGCCCCCAACTCTGAGATTTGTATTGGATGGTGAAAT
GCCTGATTATTTGCTTGCGAAGGATTTGATTTTACAAATAATTGGTGAAA
TCTCTGTGGCTGGTGCAACATATAAATCTATGGAGTTTGTTGGCACAACT
GTTGAACGTTTAAGTATGGAAGAGCGCATGACATTATGCAACATGGTTGT
CGAAGCTGGGGGAAAGAA
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