CF509788

Overview
NameCF509788
Unique NameCF509788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length318
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_DESVH (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=leuC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.254e-26
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT G  G FATG+G+TD    +  G+   KVPPT+R    G +P Y+ AKDLIL +IG I V GA Y+++EF G  +E L +E RMT+ NM +EAGGK
Sbjct:  120 VGADSHTCTYGGLGAFATGLGSTDVAGAMALGETWFKVPPTIRATFTGTLPAYVGAKDLILTLIGAIGVDGALYRALEFDGAAIEALDVEGRMTMANMAIEAGGK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_DESDG (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio desulfuricans (strain G20) GN=leuC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.638e-26
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT G  G FATG+G+TD    +  G+   KVPP++R    G MP ++ AKDL+LQ+IG I V GA YK++EF G  V+ +S+E RMT+ NM +EAGGK
Sbjct:  120 VGADSHTCTYGGLGAFATGLGSTDVAGAMALGETWFKVPPSIRVSYRGTMPAHVGAKDLVLQLIGHIGVDGALYKALEFDGPVVDAMSVEGRMTIANMAIEAGGK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC1_METMA (3-isopropylmalate dehydratase large subunit 1 OS=Methanosarcina mazei GN=leuC1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.638e-26
Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSH+CT GAFG FATG+G TD   +  TGK+  KVP + R  ++G +  ++ AKDL L +IG+  +AGATYK++EF G  +  LS+  RMTLCNM +E G K
Sbjct:   95 VGADSHSCTYGAFGAFATGVGATDMAEIFATGKLWFKVPESFRMTVEGSLDKHVYAKDLTLYLIGKTGIAGATYKAVEFYGQAISELSVAGRMTLCNMAIEMGAK 199          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC1_ARCFU (3-isopropylmalate dehydratase large subunit 1 OS=Archaeoglobus fulgidus GN=leuC1 PE=3 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.638e-26
Identity = 52/105 (49.52%), Postives = 74/105 (70.48%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTC  GA G FATGIG+TD GFVL  GK+  KVP ++RF + G++  ++  KD++L++IG +   GA YK+  + G  VE+L M +R+T+CNM +E GGK
Sbjct:  118 VGADSHTCMYGALGAFATGIGSTDMGFVLAMGKLWFKVPESIRFNVHGKLEKHVYGKDIVLKLIGMVGADGANYKACIYSGEVVEKLGMSDRLTMCNMAIEMGGK 222          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_THEYD (3-isopropylmalate dehydratase large subunit OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=leuC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.139e-26
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATG+G+TDA   + TG+   KVP T++F+  G++  ++  KDLIL  IG+I V GA+Y +MEF+G  ++ + M  R ++CNM +EAG K
Sbjct:  120 IGADSHTCTYGALGAFATGVGSTDAAIAMATGECWFKVPETIKFIYYGKLQKWVSGKDLILYTIGDIGVDGASYMAMEFIGEVIDNMPMSGRFSMCNMAIEAGAK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC2_METMA (3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina mazei GN=leuC2 PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.793e-26
Identity = 51/105 (48.57%), Postives = 75/105 (71.43%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G+DSHTC  G+ G F+TGIG+TD   V  TGK+  +VP T RF ++G++P+ + +KDLIL +IG++ V G  Y + E+ G+T+  LS+ ERMT+ NM +E GGK
Sbjct:  119 VGSDSHTCAYGSLGAFSTGIGSTDMAAVFATGKLWFRVPETFRFEVEGKLPERVYSKDLILHLIGDVGVEGVRYMAAEYAGSTIRSLSIPERMTMSNMAIEMGGK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_DESAA (3-isopropylmalate dehydratase large subunit OS=Desulfatibacillum alkenivorans (strain AK-01) GN=leuC PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.765e-26
Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT G  G FATG+G+TD    + TG+V LKVP +++FV  G++  ++  KDLIL  IG+I V GA Y +MEF G  ++ L M ER+T+ NM +EAGGK
Sbjct:  120 IGADSHTCTYGGLGAFATGVGSTDLAAAMITGEVWLKVPESIKFVYKGKLRPHVEGKDLILHTIGDIGVDGALYMAMEFTGEVIDALPMAERLTMANMAIEAGGK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CLOAB (3-isopropylmalate dehydratase large subunit OS=Clostridium acetobutylicum GN=leuC PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.765e-26
Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG+G+TD    + TGK   KVP  ++FVL G+   ++  KD+IL IIG I V GA YKSME+ G  +E LSM++R T+ NM +EAG K
Sbjct:  122 IGADSHTCTYGALGVFSTGVGSTDMAVGMATGKAWFKVPEAIKFVLKGKPAKWVSGKDIILHIIGMIGVDGALYKSMEYTGDGLEYLSMDDRFTIANMAIEAGAK 226          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC1_METKA (3-isopropylmalate dehydratase large subunit 1 OS=Methanopyrus kandleri GN=leuC1 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.765e-26
Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATGIG+TD   V  TGK+  +VP T R  + GE+P+ + AKD++L++ GEI   GATY ++E+ G  V  +S+ +RM LCNM +E G K
Sbjct:  118 VGADSHTCTHGALGAFATGIGSTDMAAVFATGKLWFRVPETYRVEITGELPEGVYAKDVVLKVTGEIGADGATYMAIEYHGEVVREMSVSDRMCLCNMAIEMGAK 222          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_DESDA (3-isopropylmalate dehydratase large subunit OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=leuC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.127e-26
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT G  G FATG+G+TD    +  G+  LKVP T+R  + G+MP +L  KDL+L +IG I V GA YK++EF G+ V+ LS+E R+++ NM +EAGGK
Sbjct:  120 IGADSHTCTYGGIGAFATGMGSTDIAAGMALGETWLKVPSTIRVNISGDMPRWLRGKDLMLMLIGAIGVDGALYKALEFGGSVVDALSVEGRLSMANMAIEAGGK 224          
The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_DESVH1.254e-2652.383-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_DESDG1.638e-2652.383-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC1_METMA1.638e-2650.483-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC1_ARCFU1.638e-2649.523-isopropylmalate dehydratase large subunit 1 OS=A... [more]
LEUC_THEYD2.139e-2648.573-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC2_METMA2.793e-2648.573-isopropylmalate dehydratase large subunit 2 OS=M... [more]
LEUC_DESAA4.765e-2651.433-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_CLOAB4.765e-2652.383-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC1_METKA4.765e-2650.483-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC_DESDA8.127e-2651.433-isopropylmalate dehydratase large subunit OS=Des... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-296 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bp
GTTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTG
CCACTGGCATTGGCAACACTGATGCAGGTTTTGTATTGGGCACAGGGAAA
GTCTTGCTCAAGGTGCCCCCAACTCTGAGATTTGTATTGGATGGTGAAAT
GCCTGATTATTTGCTTGCGAAGGATTTGATTTTACAAATAATTGGTGAAA
TCTCTGTGGCTGGTGCAACATATAAATCTATGGAGTTTGTTGGCACAACT
GTTGAACGTTTAAGTATGGAAGAGCGCATGACATTATGCAACATGGTTGT
CGAAGCTGGGGGAAAGAA
back to top