CF509788

Overview
NameCF509788
Unique NameCF509788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length318
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CLOK5 (3-isopropylmalate dehydratase large subunit OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=leuC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.127e-26
Identity = 54/105 (51.43%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG+G+TD    + TG+   KVP  ++FVL+G++  ++  KD+IL IIG I V GA Y SMEF G  V  LSM++R T+ NM +EAG K
Sbjct:  120 IGADSHTCTYGALGAFSTGVGSTDMAAGMATGEAWFKVPEAIKFVLNGKLSPWVSGKDIILHIIGMIGVDGALYNSMEFTGEGVGELSMDDRFTIANMAIEAGAK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CLOBB (3-isopropylmalate dehydratase large subunit OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=leuC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.127e-26
Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TGIG+TD    + TG+   KVP  ++F+L  +   ++  KD+IL IIG I V GA YKSMEFVG  +  LSM++R T+ NM +EAGGK
Sbjct:  120 IGADSHTCTYGALGAFSTGIGSTDMAAGMATGQTWFKVPSAIKFILKNKPAKWVSGKDIILHIIGMIGVDGALYKSMEFVGDGLNYLSMDDRFTMANMAIEAGGK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CLOBA (3-isopropylmalate dehydratase large subunit OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=leuC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.127e-26
Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TGIG+TD    + TG+   KVP  ++F+L  +   ++  KD+IL IIG I V GA YKSMEFVG  +  LSM++R T+ NM +EAGGK
Sbjct:  120 IGADSHTCTYGALGAFSTGIGSTDMAAGMATGQTWFKVPSAIKFILKNKPAKWVSGKDIILHIIGMIGVDGALYKSMEFVGDGLNYLSMDDRFTMANMAIEAGGK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CALS8 (3-isopropylmalate dehydratase large subunit OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=leuC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.061e-25
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TGIG+TD    + TGK   KVP  ++FVL G+   +   KD+IL IIG I V GA YKSME+ G  ++ LSM++R T+ NM +EAG K
Sbjct:  122 IGADSHTCTYGALGAFSTGIGSTDMACAMATGKCWFKVPEAIKFVLYGKKTGWTSGKDIILHIIGMIGVDGALYKSMEYTGEGLKSLSMDDRFTIANMAIEAGAK 226          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ANATD (3-isopropylmalate dehydratase large subunit OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=leuC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.386e-25
Identity = 54/105 (51.43%), Postives = 71/105 (67.62%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TGIG+TD    + TGK   KVP  ++F+L G+   +   KD+IL IIG I V GA YKSME+ G  ++ LSM++R T+ NM +EAG K
Sbjct:  122 IGADSHTCTYGALGAFSTGIGSTDMACAMATGKCWFKVPEAIKFILYGKKTGWTSGKDIILHIIGMIGVDGALYKSMEYTGEGLKSLSMDDRFTIANMAIEAGAK 226          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_HYDS0 (3-isopropylmalate dehydratase large subunit OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=leuC PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.811e-25
Identity = 49/105 (46.67%), Postives = 74/105 (70.48%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT G  G F+TG+G+TD  + + TG++ LKVP +++F+  G++  ++  KDLIL  IG+I V GA Y++MEF G  +  L + +R+T+ NM +EAGGK
Sbjct:  119 VGADSHTCTYGGIGAFSTGVGSTDLAYAMATGEIWLKVPESMKFIFYGKLNKWVSGKDLILYTIGQIGVDGALYRAMEFDGEAIRSLDVSQRLTIANMAIEAGGK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CAMC1 (3-isopropylmalate dehydratase large subunit OS=Campylobacter concisus (strain 13826) GN=leuC PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.811e-25
Identity = 51/105 (48.57%), Postives = 75/105 (71.43%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG+G+TD  + + TGK   KVP +++ V  G++  ++  KDLIL+II +I V GA YK++EF G  ++ LSM++R ++CNM +EAG K
Sbjct:  119 IGADSHTCTHGALGAFSTGMGSTDLAYAMITGKNWFKVPESIKVVFKGKLDKHVYGKDLILEIIRQIGVDGALYKALEFSGEVIDGLSMDDRFSMCNMAIEAGAK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC1_METAC (3-isopropylmalate dehydratase large subunit 1 OS=Methanosarcina acetivorans GN=leuC1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.811e-25
Identity = 52/105 (49.52%), Postives = 71/105 (67.62%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSH+CT GAFG FATG+G TD   +  TGK+  KVP + R  ++G +   + AKDL L +IG+  +AGATYK++EF G  +  L++  RMTLCNM +E G K
Sbjct:  128 VGADSHSCTYGAFGAFATGVGATDMAEIFATGKLWFKVPESFRMTVEGSLRKGVYAKDLTLYLIGKTGIAGATYKAVEFYGQAIRELTVAGRMTLCNMAIEMGAK 232          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC2_ARCFU (3-isopropylmalate dehydratase large subunit 2 OS=Archaeoglobus fulgidus GN=leuC2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.033e-25
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT G  G F+TG+G+TD    +  GK   +VP + R  LDG +P  + AKD+IL++IG++ V GATYK++EF G   E +++EER+T+ NM VE G K
Sbjct:  115 VGADSHTCTYGGIGAFSTGMGSTDVAVAIALGKNWFRVPESFRVQLDGSLPKGVFAKDVILKLIGDLGVDGATYKALEFHGECAENMTVEERLTIANMAVECGAK 219          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_SULDN (3-isopropylmalate dehydratase large subunit OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=leuC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.268e-25
Identity = 52/105 (49.52%), Postives = 73/105 (69.52%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG+G+TD  F + TG    KVP +++  L G+   Y   KD+IL+II  I V GA YK++EF G+T+E LS+++R ++CNM +EAG K
Sbjct:  119 IGADSHTCTHGALGAFSTGMGSTDLAFAMITGGNWFKVPESIKVNLSGKPSKYTTGKDIILEIIRLIGVDGALYKTLEFTGSTIEHLSIDDRFSMCNMAIEAGAK 223          
The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_CLOK58.127e-2651.433-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_CLOBB8.127e-2652.383-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_CLOBA8.127e-2652.383-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_CALS81.061e-2552.383-isopropylmalate dehydratase large subunit OS=Cal... [more]
LEUC_ANATD1.386e-2551.433-isopropylmalate dehydratase large subunit OS=Ana... [more]
LEUC_HYDS01.811e-2546.673-isopropylmalate dehydratase large subunit OS=Hyd... [more]
LEUC_CAMC11.811e-2548.573-isopropylmalate dehydratase large subunit OS=Cam... [more]
LEUC1_METAC1.811e-2549.523-isopropylmalate dehydratase large subunit 1 OS=M... [more]
LEUC2_ARCFU4.033e-2548.573-isopropylmalate dehydratase large subunit 2 OS=A... [more]
LEUC_SULDN5.268e-2549.523-isopropylmalate dehydratase large subunit OS=Sul... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-296 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bp
GTTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTG
CCACTGGCATTGGCAACACTGATGCAGGTTTTGTATTGGGCACAGGGAAA
GTCTTGCTCAAGGTGCCCCCAACTCTGAGATTTGTATTGGATGGTGAAAT
GCCTGATTATTTGCTTGCGAAGGATTTGATTTTACAAATAATTGGTGAAA
TCTCTGTGGCTGGTGCAACATATAAATCTATGGAGTTTGTTGGCACAACT
GTTGAACGTTTAAGTATGGAAGAGCGCATGACATTATGCAACATGGTTGT
CGAAGCTGGGGGAAAGAA
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