CF509788

Overview
NameCF509788
Unique NameCF509788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length318
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_MOOTA (3-isopropylmalate dehydratase large subunit OS=Moorella thermoacetica (strain ATCC 39073) GN=leuC PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.268e-25
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATG+G+TD    + TG++  KVP T+ F   G++  ++  KDLIL  IG I V GA Y +MEF G  +  LSME R T+ NM +EAGGK
Sbjct:  120 IGADSHTCTYGALGAFATGVGSTDLAAAMATGELWFKVPETILFRYHGKLKPWVGGKDLILYTIGRIGVDGARYMAMEFTGEAITNLSMEGRFTMANMAIEAGGK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_THEP3 (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=leuC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.880e-25
Identity = 54/105 (51.43%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA   F+TG+G+TD    + TGK   KVP  ++FVL G +  ++  KD+IL IIG+I V GA YKSMEF G  ++ LSM++R T+ NM +EAG K
Sbjct:  119 IGADSHTCTYGALTCFSTGVGSTDMAAAMATGKAWFKVPEAIKFVLKGNLQKWVSGKDVILYIIGKIGVDGALYKSMEFTG-NIKALSMDDRFTIANMAIEAGAK 222          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CLOTH (3-isopropylmalate dehydratase large subunit OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=leuC PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.880e-25
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TGIG+TD    + TG+   KVP  ++FVL G+   ++  KD+IL IIG I V GA Y+SMEF G  V  LSM++R  + NM +EAG K
Sbjct:  120 IGADSHTCTYGALGAFSTGIGSTDMAAGMATGEAWFKVPEAMKFVLKGKPGKWVSGKDIILHIIGMIGVDGALYRSMEFTGDGVAHLSMDDRFAMANMAIEAGAK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_THETN (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter tengcongensis GN=leuC PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.174e-24
Identity = 54/105 (51.43%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA   FATG+G+TD    + TGK   KVP  ++FVL G +  ++  KD+IL IIG+I V GA YKSMEF G  ++ LS+++R T+ NM +EAG K
Sbjct:  119 IGADSHTCTYGALTCFATGVGSTDMAAAMATGKAWFKVPEAIKFVLKGNLGKWVSGKDVILYIIGKIGVDGALYKSMEFTG-NIKALSIDDRFTIANMAIEAGAK 222          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CAMFF (3-isopropylmalate dehydratase large subunit OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=leuC PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.533e-24
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG+G+TD  + + TGK   KVP T++    G+   ++  KDLIL++I +I V GA YK++EF G  ++ L M+ R +LCNM +EAGGK
Sbjct:  119 IGADSHTCTHGALGAFSTGMGSTDLAYAMITGKNWFKVPATIKVEFVGKPAKHIYGKDLILEVIRQIGVDGALYKALEFCGDAMKYLDMDSRFSLCNMAIEAGGK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_UNCTG (3-isopropylmalate dehydratase large subunit OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=leuC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.002e-24
Identity = 52/105 (49.52%), Postives = 73/105 (69.52%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG G+TD    + TGK+  KVP +++F+L+ ++  ++  KD+IL IIG I V GA Y SMEF G   ++L+M +R T+ NM +EAGGK
Sbjct:  120 IGADSHTCTYGALGAFSTGGGSTDIAAAMATGKIWFKVPNSIKFILNRKLNKWVSGKDIILYIIGLIGVDGALYNSMEFDGPLCKKLTMADRFTITNMAIEAGGK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_THEPX (3-isopropylmalate dehydratase large subunit OS=Thermoanaerobacter sp. (strain X514) GN=leuC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.002e-24
Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA   F+TG+G+TD    + TGK   KVP  ++FVL G +  ++  KD+IL IIG+I V GA YKSMEF G  ++ LS+++R T+ NM +EAG K
Sbjct:  119 IGADSHTCTYGALTCFSTGVGSTDMAAAMATGKAWFKVPEAIKFVLKGNLQKWVSGKDVILYIIGKIGVDGALYKSMEFTG-NIKALSIDDRFTIANMAIEAGAK 222          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_SULNB (3-isopropylmalate dehydratase large subunit OS=Sulfurovum sp. (strain NBC37-1) GN=leuC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.002e-24
Identity = 49/105 (46.67%), Postives = 74/105 (70.48%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG+G+TD  F + TG    KVP T++ VL G+  +++  KD+IL++I  + V GA YK++EF G  ++ L+M++R ++CNM +EAG K
Sbjct:  119 IGADSHTCTHGALGAFSTGMGSTDLAFGMITGGNWFKVPETIKVVLTGKSGEHIYGKDIILELIRILGVDGALYKALEFTGDAIQHLAMDDRFSMCNMAIEAGAK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ARCB4 (3-isopropylmalate dehydratase large subunit OS=Arcobacter butzleri (strain RM4018) GN=leuC PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.002e-24
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG+G+TD  F + TG    KVP +++ +  G+   ++  KDLIL+II  + V GA YK++EF G T++ LSM++R +LCNM +EAG K
Sbjct:  119 IGADSHTCTHGALGAFSTGMGSTDISFGMITGGNWFKVPESIKVIFKGKPAPFVTGKDLILEIIRILGVDGALYKALEFTGDTIQYLSMDDRFSLCNMAIEAGAK 223          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_HELHP (3-isopropylmalate dehydratase large subunit OS=Helicobacter hepaticus GN=leuC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.614e-24
Identity = 51/105 (48.57%), Postives = 73/105 (69.52%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG+G+TD    + TG+   KVP  ++F L G++  Y+  KD+IL IIG+I V GA YKSMEF G  ++ L++++R+ + NM +EAG K
Sbjct:  120 IGADSHTCTYGALGAFSTGVGSTDMAVGMATGQAWFKVPYAIKFNLKGKLRPYVSGKDVILHIIGKIGVDGALYKSMEFGGEGLKNLTIDDRLCIANMAIEAGAK 224          
The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_MOOTA5.268e-2551.433-isopropylmalate dehydratase large subunit OS=Moo... [more]
LEUC_THEP36.880e-2551.433-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_CLOTH6.880e-2551.433-isopropylmalate dehydratase large subunit OS=Clo... [more]
LEUC_THETN1.174e-2451.433-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_CAMFF1.533e-2448.573-isopropylmalate dehydratase large subunit OS=Cam... [more]
LEUC_UNCTG2.002e-2449.523-isopropylmalate dehydratase large subunit OS=Unc... [more]
LEUC_THEPX2.002e-2450.483-isopropylmalate dehydratase large subunit OS=The... [more]
LEUC_SULNB2.002e-2446.673-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_ARCB42.002e-2448.573-isopropylmalate dehydratase large subunit OS=Arc... [more]
LEUC_HELHP2.614e-2448.573-isopropylmalate dehydratase large subunit OS=Hel... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-296 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bp
GTTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTG
CCACTGGCATTGGCAACACTGATGCAGGTTTTGTATTGGGCACAGGGAAA
GTCTTGCTCAAGGTGCCCCCAACTCTGAGATTTGTATTGGATGGTGAAAT
GCCTGATTATTTGCTTGCGAAGGATTTGATTTTACAAATAATTGGTGAAA
TCTCTGTGGCTGGTGCAACATATAAATCTATGGAGTTTGTTGGCACAACT
GTTGAACGTTTAAGTATGGAAGAGCGCATGACATTATGCAACATGGTTGT
CGAAGCTGGGGGAAAGAA
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