CF509788

Overview
NameCF509788
Unique NameCF509788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length318
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_BACFR (3-isopropylmalate dehydratase large subunit OS=Bacteroides fragilis GN=leuC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.301e-15
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GA G  A GIG ++   VL +  +L   P T+R  +DG++   + AKD+ L ++ +++ +GAT   +E+ G  +  L+ME R+TLCN+ +E G +
Sbjct:  127 DSHTSTHGAMGAVAFGIGTSEVEMVLASQCILQSRPKTMRITVDGKLGKGVTAKDIALYMMSKMTTSGATGYFVEYAGEAIRSLTMEGRLTLCNLSIEMGAR 228          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_BACFN (3-isopropylmalate dehydratase large subunit OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=leuC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.301e-15
Identity = 39/102 (38.24%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GA G  A GIG ++   VL +  +L   P T+R  +DG++   + AKD+ L ++ +++ +GAT   +E+ G  +  L+ME R+TLCN+ +E G +
Sbjct:  127 DSHTSTHGAMGAVAFGIGTSEVEMVLASQCILQSRPKTMRITVDGKLGKGVTAKDIALYMMSKMTTSGATGYFVEYAGEAIRSLTMEGRLTLCNLSIEMGAR 228          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ARTCA (3-isopropylmalate dehydratase large subunit OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=leuC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.301e-15
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   V+ T  + LK   T+   ++G +   + AKD+IL +I +I   G     +E+ G+ +  LSM+ RMT+CNM +EAG +
Sbjct:  133 DSHTSTHGAFGALAMGIGTSEVEHVMATQTLSLKPFKTMAINVEGTLRPGVTAKDIILAVIAKIGTGGGQGYVLEYRGSAIRALSMDARMTICNMSIEAGAR 234          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ARTAT (3-isopropylmalate dehydratase large subunit OS=Arthrobacter aurescens (strain TC1) GN=leuC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.301e-15
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   V+ T  + LK   T+   ++G +   + AKD+IL +I +I   G     +E+ G+ +  LSM+ RMT+CNM +EAG +
Sbjct:  133 DSHTSTHGAFGALAMGIGTSEVEHVMATQTLSLKPFKTMAINVEGTLRPGVTAKDIILAVIAKIGTGGGQGYVLEYRGSAIRALSMDARMTICNMSIEAGAR 234          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ACAM1 (3-isopropylmalate dehydratase large subunit OS=Acaryochloris marina (strain MBIC 11017) GN=leuC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.301e-15
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  + GIG +    VL +  + L      +  ++G +P  + AKD+IL II  + V G    + EF GTT E+++M+ERMT+CNM +E G +
Sbjct:  129 DSHTSTHGAFGAISFGIGTSQVRDVLASQTLALAKLKVRKVEVNGTLPAGVYAKDVILHIIRTLGVKGGVGYAYEFAGTTFEQMTMDERMTVCNMSIEGGAR 230          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC1_DEIRA (3-isopropylmalate dehydratase large subunit 1 OS=Deinococcus radiodurans GN=leuC1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.301e-15
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            LG+DSH+ T GA   F +G+G TD      +GK  L+VP +++  L G++   + AKD+ L++I  +   GATY+S+E      +R +  ERMTL N+ VEAG K
Sbjct:  133 LGSDSHSTTYGAVAAFGSGMGATDIALAAASGKTWLRVPESVKVTLTGDLRPGVTAKDVALEMIRVLGADGATYQSVEI--HAGDRFTRGERMTLANLCVEAGAK 235          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_SALRD (3-isopropylmalate dehydratase large subunit OS=Salinibacter ruber (strain DSM 13855) GN=leuC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.699e-15
Identity = 43/102 (42.16%), Postives = 60/102 (58.82%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG    GIG +    VL T  + ++     R  +DG + + + AKD+IL+IIGE+ V G      E+ G  ++ LSME RM++CNM VE G +
Sbjct:  129 DSHTSTHGAFGTLGFGIGTSQIRDVLATQCIAMEKQDVRRIQVDGALGEGVYAKDIILKIIGELGVEGGIGYVYEYGGPAIKGLSMEGRMSICNMSVEGGAR 230          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_BLOPB (3-isopropylmalate dehydratase large subunit OS=Blochmannia pennsylvanicus (strain BPEN) GN=leuC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.699e-15
Identity = 45/100 (45.00%), Postives = 59/100 (59.00%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAG 310
            DSHT T GAFG  A GIG ++   VL T  +      +++  L G +   + AKD+IL IIG+I   G +   +EF G  +  LSMEERMTLCNM +E G
Sbjct:  128 DSHTATHGAFGALAFGIGTSEIEHVLATQTLQQIRYKSMQINLSGIIAPQITAKDIILAIIGKIGHGGGSGHVVEFCGPIITLLSMEERMTLCNMAIEMG 227          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ACIBT (3-isopropylmalate dehydratase large subunit OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=leuC PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.699e-15
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +   +DG +   +  KD++L IIG+I  AG T  ++EF G     +S+E RMT+CNM +EAG +
Sbjct:  134 DSHTATHGAFGCLAHGIGTSEVEHVLATQCLVQKKSKNMLVRVDGVLGKGVTPKDVVLAIIGKIGTAGGTGYAIEFGGQVFRDMSIEGRMTVCNMAIEAGAR 235          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ACIBC (3-isopropylmalate dehydratase large subunit OS=Acinetobacter baumannii (strain ACICU) GN=leuC PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.699e-15
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +   +DG +   +  KD++L IIG+I  AG T  ++EF G     +S+E RMT+CNM +EAG +
Sbjct:  134 DSHTATHGAFGCLAHGIGTSEVEHVLATQCLVQKKSKNMLVRVDGVLGKGVTPKDVVLAIIGKIGTAGGTGYAIEFGGQVFRDMSIEGRMTVCNMAIEAGAR 235          
The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_BACFR1.301e-1538.243-isopropylmalate dehydratase large subunit OS=Bac... [more]
LEUC_BACFN1.301e-1538.243-isopropylmalate dehydratase large subunit OS=Bac... [more]
LEUC_ARTCA1.301e-1540.203-isopropylmalate dehydratase large subunit OS=Art... [more]
LEUC_ARTAT1.301e-1540.203-isopropylmalate dehydratase large subunit OS=Art... [more]
LEUC_ACAM11.301e-1541.183-isopropylmalate dehydratase large subunit OS=Aca... [more]
LEUC1_DEIRA1.301e-1540.953-isopropylmalate dehydratase large subunit 1 OS=D... [more]
LEUC_SALRD1.699e-1542.163-isopropylmalate dehydratase large subunit OS=Sal... [more]
LEUC_BLOPB1.699e-1545.003-isopropylmalate dehydratase large subunit OS=Blo... [more]
LEUC_ACIBT1.699e-1542.163-isopropylmalate dehydratase large subunit OS=Aci... [more]
LEUC_ACIBC1.699e-1542.163-isopropylmalate dehydratase large subunit OS=Aci... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-296 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bp
GTTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTG
CCACTGGCATTGGCAACACTGATGCAGGTTTTGTATTGGGCACAGGGAAA
GTCTTGCTCAAGGTGCCCCCAACTCTGAGATTTGTATTGGATGGTGAAAT
GCCTGATTATTTGCTTGCGAAGGATTTGATTTTACAAATAATTGGTGAAA
TCTCTGTGGCTGGTGCAACATATAAATCTATGGAGTTTGTTGGCACAACT
GTTGAACGTTTAAGTATGGAAGAGCGCATGACATTATGCAACATGGTTGT
CGAAGCTGGGGGAAAGAA
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