CF509788

Overview
NameCF509788
Unique NameCF509788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length318
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_GEOSL (3-isopropylmalate dehydratase large subunit OS=Geobacter sulfurreducens GN=leuC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.614e-24
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGG 313
            DSHTCT GAFG FA GIG TD    +  G    + P T+R  L+G +P+ + AKD+IL +IG I V GAT + MEF G+ V+ ++ME RMTLCNM +EAGG
Sbjct:  121 DSHTCTHGAFGAFAAGIGTTDLEVGILKGVCAFREPKTIRINLNGSLPEGVYAKDVILHVIGRIGVNGATDRVMEFRGSVVDTMTMESRMTLCNMAIEAGG 221          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ELUMP (3-isopropylmalate dehydratase large subunit OS=Elusimicrobium minutum (strain Pei191) GN=leuC PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.614e-24
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATG+G+TD    +  GK  LK P T +  ++G     + AKDLIL +IG I   GATYK++EF G+T+  + M +R TL NM VEAG K
Sbjct:  116 IGADSHTCTGGALGAFATGMGSTDVAVGMALGKTWLKAPQTFKIEVEGAFKKGVGAKDLILHLIGVIGADGATYKALEFHGSTIRNMEMADRFTLANMAVEAGAK 220          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_METB6 (3-isopropylmalate dehydratase large subunit OS=Methanoregula boonei (strain 6A8) GN=leuC PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.415e-24
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTC  GA G FATGIG+TD GF L  G +  KVP T+R  + G+    + AKDLIL I  +I   GATY+++EF G T+ ++ M  RMT CNM +E G K
Sbjct:  117 VGADSHTCMYGAVGAFATGIGSTDMGFALKFGALYFKVPETVRAEISGKFQKRVGAKDLILSIAADIGADGATYQAIEFTGKTISKMDMAGRMTCCNMAIEMGAK 221          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_DESHY (3-isopropylmalate dehydratase large subunit OS=Desulfitobacterium hafniense (strain Y51) GN=leuC PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 3.415e-24
Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDG-EMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATG+G+TD    + TG+   ++P +++F+  G     ++  KDLIL  IG+I V GA Y+SMEF G  +  LSM+ R+T+CNM VEAG K
Sbjct:  120 IGADSHTCTYGALGAFATGVGSTDLAAGMATGEAWFRIPESIKFIFKGTNFQPWVSGKDLILYTIGKIGVDGARYRSMEFTGEGIAALSMDGRLTMCNMAVEAGAK 225          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC1_THEMA (3-isopropylmalate dehydratase large subunit 1 OS=Thermotoga maritima GN=leuC1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.415e-24
Identity = 49/104 (47.12%), Postives = 73/104 (70.19%), Query Frame = 2
Query:    5 GTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            G DSHTCTAG  G F TG+G+TD   + G G+   KVP T++ V++G++ D + AKD+IL+I   +   GATYK++EF G+ +E +++E+R+T+ NM VE G K
Sbjct:  116 GADSHTCTAGGLGAFGTGMGSTDVAIIFGLGQNWFKVPETIKVVVNGKLQDGVYAKDIILEIARILGSDGATYKALEFHGSCIENMNVEDRLTISNMAVEVGAK 219          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC2_THEMA (3-isopropylmalate dehydratase large subunit 2 OS=Thermotoga maritima GN=leuC2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.824e-24
Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTD-AGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G FATG+G+TD AGF L  GKV  +VP +++  L G+  D + AKDL+L++I  + V GA YK++EF G  V+ +SM+ R T+ NM +EAGGK
Sbjct:  117 VGADSHTCTYGALGAFATGVGSTDIAGFYL-IGKVWFRVPESIKVTLRGKFKDLVTAKDLVLKLISILGVDGANYKAIEFSGPGVKEISMDGRFTISNMAIEAGGK 221          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CAMHC (3-isopropylmalate dehydratase large subunit OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=leuC PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.298e-23
Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT GA G F+TG+G+TD  + + TGK   KVP +++ VL G + +++  KDLIL++I  I V GA YK++EF G  ++ + M+ R ++CNM +EAG K
Sbjct:  119 IGADSHTCTHGALGAFSTGMGSTDIAYAMITGKNWFKVPKSIKVVLKGRLGEHIYGKDLILKLISMIGVDGALYKALEFCG-DIQNIDMDSRFSMCNMAIEAGAK 222          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_SULSY (3-isopropylmalate dehydratase large subunit OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=leuC PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.695e-23
Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 2
Query:    2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            +G DSHTCT G  G F+TG+G+TD  ++  TG+  L+VP +++FV   +   ++  KD +L +IG+I V GA YK+ME+ G  +  L ++ R+T+ NM +EAGGK
Sbjct:  120 IGADSHTCTYGGIGAFSTGVGSTDIAYIWATGETWLRVPESMKFVFYNKPQKWVGGKDFVLTVIGKIGVDGALYKAMEYQGEAIRALDIDNRLTIANMAIEAGGK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_DESOH (3-isopropylmalate dehydratase large subunit OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=leuC PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.775e-23
Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGG 313
            DSHTCT GAFG FA G+G TD    +  G   L  P T++ VL+G++   + AKD+IL +I E+ V GAT + +EF G  V+ +SME RMTLCNM +EAGG
Sbjct:  121 DSHTCTYGAFGAFAAGVGTTDLEVGILKGVCALNYPSTIKVVLNGKLSPGVYAKDVILAVIAELGVNGATNRVIEFTGPCVDAMSMEARMTLCNMAIEAGG 221          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_GEOUR (3-isopropylmalate dehydratase large subunit OS=Geobacter uraniireducens (strain Rf4) GN=leuC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.440e-23
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGG 313
            DSHTCT GAFG FA G+G TD    +  G    + P T+R  L+G++P  + AKD IL +IG + V GAT + +EF G  V+ ++ME RMTLCNM +EAGG
Sbjct:  121 DSHTCTHGAFGAFAAGVGTTDLEVGILKGVCAFREPKTIRINLNGKLPKGVYAKDAILHVIGRLGVNGATDRVIEFRGAVVDAMTMESRMTLCNMAIEAGG 221          
The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_GEOSL2.614e-2453.473-isopropylmalate dehydratase large subunit OS=Geo... [more]
LEUC_ELUMP2.614e-2450.483-isopropylmalate dehydratase large subunit OS=Elu... [more]
LEUC_METB63.415e-2450.483-isopropylmalate dehydratase large subunit OS=Met... [more]
LEUC_DESHY3.415e-2449.063-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC1_THEMA3.415e-2447.123-isopropylmalate dehydratase large subunit 1 OS=T... [more]
LEUC2_THEMA5.824e-2451.893-isopropylmalate dehydratase large subunit 2 OS=T... [more]
LEUC_CAMHC1.298e-2346.673-isopropylmalate dehydratase large subunit OS=Cam... [more]
LEUC_SULSY1.695e-2343.813-isopropylmalate dehydratase large subunit OS=Sul... [more]
LEUC_DESOH3.775e-2351.493-isopropylmalate dehydratase large subunit OS=Des... [more]
LEUC_GEOUR6.440e-2350.503-isopropylmalate dehydratase large subunit OS=Geo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-296 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bp
GTTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTG
CCACTGGCATTGGCAACACTGATGCAGGTTTTGTATTGGGCACAGGGAAA
GTCTTGCTCAAGGTGCCCCCAACTCTGAGATTTGTATTGGATGGTGAAAT
GCCTGATTATTTGCTTGCGAAGGATTTGATTTTACAAATAATTGGTGAAA
TCTCTGTGGCTGGTGCAACATATAAATCTATGGAGTTTGTTGGCACAACT
GTTGAACGTTTAAGTATGGAAGAGCGCATGACATTATGCAACATGGTTGT
CGAAGCTGGGGGAAAGAA
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