CF509788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_GEOSL (3-isopropylmalate dehydratase large subunit OS=Geobacter sulfurreducens GN=leuC PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 2.614e-24 Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGG 313 DSHTCT GAFG FA GIG TD + G + P T+R L+G +P+ + AKD+IL +IG I V GAT + MEF G+ V+ ++ME RMTLCNM +EAGG Sbjct: 121 DSHTCTHGAFGAFAAGIGTTDLEVGILKGVCAFREPKTIRINLNGSLPEGVYAKDVILHVIGRIGVNGATDRVMEFRGSVVDTMTMESRMTLCNMAIEAGG 221
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ELUMP (3-isopropylmalate dehydratase large subunit OS=Elusimicrobium minutum (strain Pei191) GN=leuC PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 2.614e-24 Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT GA G FATG+G+TD + GK LK P T + ++G + AKDLIL +IG I GATYK++EF G+T+ + M +R TL NM VEAG K Sbjct: 116 IGADSHTCTGGALGAFATGMGSTDVAVGMALGKTWLKAPQTFKIEVEGAFKKGVGAKDLILHLIGVIGADGATYKALEFHGSTIRNMEMADRFTLANMAVEAGAK 220
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_METB6 (3-isopropylmalate dehydratase large subunit OS=Methanoregula boonei (strain 6A8) GN=leuC PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 3.415e-24 Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTC GA G FATGIG+TD GF L G + KVP T+R + G+ + AKDLIL I +I GATY+++EF G T+ ++ M RMT CNM +E G K Sbjct: 117 VGADSHTCMYGAVGAFATGIGSTDMGFALKFGALYFKVPETVRAEISGKFQKRVGAKDLILSIAADIGADGATYQAIEFTGKTISKMDMAGRMTCCNMAIEMGAK 221
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_DESHY (3-isopropylmalate dehydratase large subunit OS=Desulfitobacterium hafniense (strain Y51) GN=leuC PE=3 SV=2) HSP 1 Score: 110.153 bits (274), Expect = 3.415e-24 Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDG-EMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT GA G FATG+G+TD + TG+ ++P +++F+ G ++ KDLIL IG+I V GA Y+SMEF G + LSM+ R+T+CNM VEAG K Sbjct: 120 IGADSHTCTYGALGAFATGVGSTDLAAGMATGEAWFRIPESIKFIFKGTNFQPWVSGKDLILYTIGKIGVDGARYRSMEFTGEGIAALSMDGRLTMCNMAVEAGAK 225
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC1_THEMA (3-isopropylmalate dehydratase large subunit 1 OS=Thermotoga maritima GN=leuC1 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 3.415e-24 Identity = 49/104 (47.12%), Postives = 73/104 (70.19%), Query Frame = 2 Query: 5 GTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 G DSHTCTAG G F TG+G+TD + G G+ KVP T++ V++G++ D + AKD+IL+I + GATYK++EF G+ +E +++E+R+T+ NM VE G K Sbjct: 116 GADSHTCTAGGLGAFGTGMGSTDVAIIFGLGQNWFKVPETIKVVVNGKLQDGVYAKDIILEIARILGSDGATYKALEFHGSCIENMNVEDRLTISNMAVEVGAK 219
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC2_THEMA (3-isopropylmalate dehydratase large subunit 2 OS=Thermotoga maritima GN=leuC2 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.824e-24 Identity = 55/106 (51.89%), Postives = 75/106 (70.75%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTD-AGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT GA G FATG+G+TD AGF L GKV +VP +++ L G+ D + AKDL+L++I + V GA YK++EF G V+ +SM+ R T+ NM +EAGGK Sbjct: 117 VGADSHTCTYGALGAFATGVGSTDIAGFYL-IGKVWFRVPESIKVTLRGKFKDLVTAKDLVLKLISILGVDGANYKAIEFSGPGVKEISMDGRFTISNMAIEAGGK 221
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CAMHC (3-isopropylmalate dehydratase large subunit OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=leuC PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.298e-23 Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT GA G F+TG+G+TD + + TGK KVP +++ VL G + +++ KDLIL++I I V GA YK++EF G ++ + M+ R ++CNM +EAG K Sbjct: 119 IGADSHTCTHGALGAFSTGMGSTDIAYAMITGKNWFKVPKSIKVVLKGRLGEHIYGKDLILKLISMIGVDGALYKALEFCG-DIQNIDMDSRFSMCNMAIEAGAK 222
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_SULSY (3-isopropylmalate dehydratase large subunit OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=leuC PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 1.695e-23 Identity = 46/105 (43.81%), Postives = 71/105 (67.62%), Query Frame = 2 Query: 2 LGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 +G DSHTCT G G F+TG+G+TD ++ TG+ L+VP +++FV + ++ KD +L +IG+I V GA YK+ME+ G + L ++ R+T+ NM +EAGGK Sbjct: 120 IGADSHTCTYGGIGAFSTGVGSTDIAYIWATGETWLRVPESMKFVFYNKPQKWVGGKDFVLTVIGKIGVDGALYKAMEYQGEAIRALDIDNRLTIANMAIEAGGK 224
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_DESOH (3-isopropylmalate dehydratase large subunit OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=leuC PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 3.775e-23 Identity = 52/101 (51.49%), Postives = 68/101 (67.33%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGG 313 DSHTCT GAFG FA G+G TD + G L P T++ VL+G++ + AKD+IL +I E+ V GAT + +EF G V+ +SME RMTLCNM +EAGG Sbjct: 121 DSHTCTYGAFGAFAAGVGTTDLEVGILKGVCALNYPSTIKVVLNGKLSPGVYAKDVILAVIAELGVNGATNRVIEFTGPCVDAMSMEARMTLCNMAIEAGG 221
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_GEOUR (3-isopropylmalate dehydratase large subunit OS=Geobacter uraniireducens (strain Rf4) GN=leuC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.440e-23 Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGG 313 DSHTCT GAFG FA G+G TD + G + P T+R L+G++P + AKD IL +IG + V GAT + +EF G V+ ++ME RMTLCNM +EAGG Sbjct: 121 DSHTCTHGAFGAFAAGVGTTDLEVGILKGVCAFREPKTIRINLNGKLPKGVYAKDAILHVIGRLGVNGATDRVIEFRGAVVDAMTMESRMTLCNMAIEAGG 221 The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bpback to top |