CF509788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_GEOMG (3-isopropylmalate dehydratase large subunit OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=leuC PE=3 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 6.440e-23 Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGG 313 DSHTCT GAFG FA G+G TD + G + P ++R L+G +P + AKD+IL +IG++ V GAT + MEF G V+ ++ME RMTLCNM +EAGG Sbjct: 121 DSHTCTHGAFGAFAAGVGTTDLEVGILKGVCAFREPKSIRINLNGTLPKGVYAKDVILYVIGQLGVNGATDRVMEFRGPVVDAMTMESRMTLCNMAIEAGG 221
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: HACA_METJA (Homoaconitase large subunit OS=Methanocaldococcus jannaschii GN=hacA PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.098e-22 Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 2 Query: 5 GTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 G DSHTCT GAFG FATG G TD ++ TG+ +KVP T+R + G+ + + AKD++L++ EI GATY ++E+ G V+ + M+ R+TLCNM +E GGK Sbjct: 115 GGDSHTCTHGAFGAFATGFGATDMAYIYATGETWIKVPKTIRVDIVGK-NENVSAKDIVLRVCKEIGRRGATYMAIEYGGEVVKNMDMDGRLTLCNMAIEMGGK 217
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_GEOBB (3-isopropylmalate dehydratase large subunit OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=leuC PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.435e-22 Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGG 313 DSHTCT GAFG FA G+G TD + G + P T+R L+G +P + AKD IL++IG + V GAT + +EF G V +++ME RMTLCNM +EAGG Sbjct: 121 DSHTCTHGAFGAFAAGVGTTDLEVGILKGVCAFREPKTIRVNLNGTLPKGVFAKDAILRVIGHLGVNGATDRVIEFGGPVVAQMTMESRMTLCNMAIEAGG 221
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC2_DEIRA (3-isopropylmalate dehydratase large subunit 2 OS=Deinococcus radiodurans GN=leuC2 PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 1.586e-21 Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHTC AGA G FATG+G+TD + GKV KVP T+ + G+ + KD++L++I +I GA Y ME+VG +++L ME R TL NM +EAGGK Sbjct: 123 DSHTCNAGALGAFATGVGSTDLAGAIYAGKVWFKVPETMLIRVTGKTNPGVTPKDIVLEVIKQIGADGANYMVMEWVGDYIDQLDMEGRFTLTNMAIEAGGK 224
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_NITWN (3-isopropylmalate dehydratase large subunit OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=leuC PE=3 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 2.706e-21 Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG ++ VL T ++ K +R V+DG++PD + AKD+IL IIGEI AG T +E+ G + LSME RMT+CNM +E G + Sbjct: 130 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRAVVDGKLPDGVTAKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGAR 231
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOPS (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain BisB5) GN=leuC PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 4.615e-21 Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG ++ VL T ++ K +R +DG++PD + AKD+IL IIGEI AG T +E+ G + LSME RMT+CNM +E G + Sbjct: 132 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGDLPDGVTAKDIILAIIGEIGTAGGTGYVLEYAGDAIRALSMEGRMTVCNMSIEGGAR 233
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOP2 (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain HaA2) GN=leuC PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 4.615e-21 Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG ++ VL T ++ K +R +DG++PD + AKD+IL IIGEI AG T +E+ G + LSME RMT+CNM +E G + Sbjct: 132 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGDLPDGVTAKDIILAIIGEIGTAGGTGYVLEYAGDAIRALSMEGRMTVCNMSIEGGAR 233
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_OLICO (3-isopropylmalate dehydratase large subunit OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=leuC PE=3 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 4.615e-21 Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG ++ VL T ++ K +R V+DG++PD + AKD+IL IIGEI AG T +E+ G + L+ME RMT+CNM +E G + Sbjct: 130 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRAVVDGKLPDGVTAKDIILAIIGEIGTAGGTGYVLEYAGEAIRALTMEGRMTICNMSIEGGAR 231
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOPT (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain TIE-1) GN=leuC PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.027e-21 Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG ++ VL T ++ K +R +DG++PD + AKD+IL IIGEI AG T +E+ G + LSME RMT+CNM +E G + Sbjct: 131 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGQLPDGVTAKDVILAIIGEIGTAGGTGYVLEYAGDAIRSLSMEGRMTVCNMSIEGGAR 232
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOPB (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain BisB18) GN=leuC PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.027e-21 Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG ++ VL T ++ K +R +DG +PD + AKD+IL IIGEI AG T +E+ G+ + LSME RMT+CNM +E G + Sbjct: 135 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGALPDGVTAKDIILAIIGEIGTAGGTGYVLEYAGSAIRALSMEGRMTVCNMSIEGGAR 236 The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bpback to top |