CF509788

Overview
NameCF509788
Unique NameCF509788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length318
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_GEOMG (3-isopropylmalate dehydratase large subunit OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=leuC PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.440e-23
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGG 313
            DSHTCT GAFG FA G+G TD    +  G    + P ++R  L+G +P  + AKD+IL +IG++ V GAT + MEF G  V+ ++ME RMTLCNM +EAGG
Sbjct:  121 DSHTCTHGAFGAFAAGVGTTDLEVGILKGVCAFREPKSIRINLNGTLPKGVYAKDVILYVIGQLGVNGATDRVMEFRGPVVDAMTMESRMTLCNMAIEAGG 221          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: HACA_METJA (Homoaconitase large subunit OS=Methanocaldococcus jannaschii GN=hacA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.098e-22
Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 2
Query:    5 GTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            G DSHTCT GAFG FATG G TD  ++  TG+  +KVP T+R  + G+  + + AKD++L++  EI   GATY ++E+ G  V+ + M+ R+TLCNM +E GGK
Sbjct:  115 GGDSHTCTHGAFGAFATGFGATDMAYIYATGETWIKVPKTIRVDIVGK-NENVSAKDIVLRVCKEIGRRGATYMAIEYGGEVVKNMDMDGRLTLCNMAIEMGGK 217          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_GEOBB (3-isopropylmalate dehydratase large subunit OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=leuC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.435e-22
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGG 313
            DSHTCT GAFG FA G+G TD    +  G    + P T+R  L+G +P  + AKD IL++IG + V GAT + +EF G  V +++ME RMTLCNM +EAGG
Sbjct:  121 DSHTCTHGAFGAFAAGVGTTDLEVGILKGVCAFREPKTIRVNLNGTLPKGVFAKDAILRVIGHLGVNGATDRVIEFGGPVVAQMTMESRMTLCNMAIEAGG 221          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC2_DEIRA (3-isopropylmalate dehydratase large subunit 2 OS=Deinococcus radiodurans GN=leuC2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.586e-21
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHTC AGA G FATG+G+TD    +  GKV  KVP T+   + G+    +  KD++L++I +I   GA Y  ME+VG  +++L ME R TL NM +EAGGK
Sbjct:  123 DSHTCNAGALGAFATGVGSTDLAGAIYAGKVWFKVPETMLIRVTGKTNPGVTPKDIVLEVIKQIGADGANYMVMEWVGDYIDQLDMEGRFTLTNMAIEAGGK 224          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_NITWN (3-isopropylmalate dehydratase large subunit OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=leuC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.706e-21
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +R V+DG++PD + AKD+IL IIGEI  AG T   +E+ G  +  LSME RMT+CNM +E G +
Sbjct:  130 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRAVVDGKLPDGVTAKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGAR 231          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOPS (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain BisB5) GN=leuC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.615e-21
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +R  +DG++PD + AKD+IL IIGEI  AG T   +E+ G  +  LSME RMT+CNM +E G +
Sbjct:  132 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGDLPDGVTAKDIILAIIGEIGTAGGTGYVLEYAGDAIRALSMEGRMTVCNMSIEGGAR 233          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOP2 (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain HaA2) GN=leuC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.615e-21
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +R  +DG++PD + AKD+IL IIGEI  AG T   +E+ G  +  LSME RMT+CNM +E G +
Sbjct:  132 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGDLPDGVTAKDIILAIIGEIGTAGGTGYVLEYAGDAIRALSMEGRMTVCNMSIEGGAR 233          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_OLICO (3-isopropylmalate dehydratase large subunit OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=leuC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.615e-21
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +R V+DG++PD + AKD+IL IIGEI  AG T   +E+ G  +  L+ME RMT+CNM +E G +
Sbjct:  130 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRAVVDGKLPDGVTAKDIILAIIGEIGTAGGTGYVLEYAGEAIRALTMEGRMTICNMSIEGGAR 231          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOPT (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain TIE-1) GN=leuC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.027e-21
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +R  +DG++PD + AKD+IL IIGEI  AG T   +E+ G  +  LSME RMT+CNM +E G +
Sbjct:  131 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGQLPDGVTAKDVILAIIGEIGTAGGTGYVLEYAGDAIRSLSMEGRMTVCNMSIEGGAR 232          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOPB (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain BisB18) GN=leuC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.027e-21
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +R  +DG +PD + AKD+IL IIGEI  AG T   +E+ G+ +  LSME RMT+CNM +E G +
Sbjct:  135 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGALPDGVTAKDIILAIIGEIGTAGGTGYVLEYAGSAIRALSMEGRMTVCNMSIEGGAR 236          
The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_GEOMG6.440e-2350.503-isopropylmalate dehydratase large subunit OS=Geo... [more]
HACA_METJA1.098e-2248.08Homoaconitase large subunit OS=Methanocaldococcus ... [more]
LEUC_GEOBB1.435e-2250.503-isopropylmalate dehydratase large subunit OS=Geo... [more]
LEUC2_DEIRA1.586e-2148.043-isopropylmalate dehydratase large subunit 2 OS=D... [more]
LEUC_NITWN2.706e-2149.023-isopropylmalate dehydratase large subunit OS=Nit... [more]
LEUC_RHOPS4.615e-2148.043-isopropylmalate dehydratase large subunit OS=Rho... [more]
LEUC_RHOP24.615e-2148.043-isopropylmalate dehydratase large subunit OS=Rho... [more]
LEUC_OLICO4.615e-2148.043-isopropylmalate dehydratase large subunit OS=Oli... [more]
LEUC_RHOPT6.027e-2148.043-isopropylmalate dehydratase large subunit OS=Rho... [more]
LEUC_RHOPB6.027e-2148.043-isopropylmalate dehydratase large subunit OS=Rho... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-296 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bp
GTTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTG
CCACTGGCATTGGCAACACTGATGCAGGTTTTGTATTGGGCACAGGGAAA
GTCTTGCTCAAGGTGCCCCCAACTCTGAGATTTGTATTGGATGGTGAAAT
GCCTGATTATTTGCTTGCGAAGGATTTGATTTTACAAATAATTGGTGAAA
TCTCTGTGGCTGGTGCAACATATAAATCTATGGAGTTTGTTGGCACAACT
GTTGAACGTTTAAGTATGGAAGAGCGCATGACATTATGCAACATGGTTGT
CGAAGCTGGGGGAAAGAA
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