CF509788

Overview
NameCF509788
Unique NameCF509788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length318
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOPA (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris GN=leuC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.027e-21
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +R  +DG++PD + AKD+IL IIGEI  AG T   +E+ G  +  LSME RMT+CNM +E G +
Sbjct:  131 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGQLPDGVTAKDVILAIIGEIGTAGGTGYVLEYAGDAIRSLSMEGRMTVCNMSIEGGAR 232          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_MAGSM (3-isopropylmalate dehydratase large subunit OS=Magnetococcus sp. (strain MC-1) GN=leuC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.027e-21
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K P T+   ++GE+P    AKD+IL IIG I  AG T   +EF G+ ++ LSME RMT+CNM +EAG +
Sbjct:  129 DSHTATHGAFGALAFGIGTSEVEHVLATQTLMQKKPKTMLIQVEGELPAGSTAKDIILYIIGNIGTAGGTGYVLEFGGSAIQALSMEGRMTVCNMAIEAGAR 230          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_JANMA (3-isopropylmalate dehydratase large subunit OS=Janthinobacterium sp. (strain Marseille) GN=leuC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.872e-21
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  +L +    +   +DG +PD + AKD++L +IG+I  AG T  ++EF G+T+  LSME RMT+CNM +EAG +
Sbjct:  128 DSHTSTHGAFGCLAHGIGTSEVEHVLATQTLLAQKSKAMLVQVDGALPDGVTAKDIVLAVIGKIGTAGGTGYAIEFAGSTIRSLSMEGRMTICNMAIEAGAR 229          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_STRAW (3-isopropylmalate dehydratase large subunit OS=Streptomyces avermitilis GN=leuC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.028e-20
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG +    VL T  + L  P T+   +DGE+PD + AKDLIL II  I   G     +E+ G+ +E+LSME RMT+CNM +EAG +
Sbjct:  128 DSHTSTHGAFGALAFGIGTSQVEHVLATQTLPLARPKTMAITVDGELPDGVTAKDLILAIIARIGTGGGQGYILEYRGSAIEKLSMEARMTICNMSIEAGAR 229          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_MARMM (3-isopropylmalate dehydratase large subunit OS=Maricaulis maris (strain MCS10) GN=leuC PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.343e-20
Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG T+ G VL +  +L + P ++R  +DGE    + AKD+IL II EI V G T   +E+ G+ +E L ME RMT+CNM +EAG +
Sbjct:  145 DSHTATHGAFGALAFGIGTTEVGHVLASQCLLQRKPKSMRVTVDGETAAGISAKDIILAIIAEIGVDGGTGCVIEYAGSAIEALDMEGRMTVCNMSIEAGAR 246          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOBA (3-isopropylmalate dehydratase large subunit OS=Rhodopirellula baltica GN=leuC PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.754e-20
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  +L   P T    +DGE+   + AKD+IL +IG+I  AG T   +EF G  V  L+MEERMT+CNM +EAG +
Sbjct:  147 DSHTATHGAFGSLAFGIGTSEVEHVLATQTLLQFKPKTFELRVDGELARGVTAKDMILYLIGQIGTAGGTGYVLEFTGDAVRNLTMEERMTVCNMSIEAGAR 248          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC2_BRAJA (3-isopropylmalate dehydratase large subunit 2 OS=Bradyrhizobium japonicum GN=leuC2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.754e-20
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +R  +DG++PD +  KD+IL IIGEI  AG T   +E+ G  +  LSME RMT+CNM +E G +
Sbjct:  130 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGKLPDGVTGKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGAR 231          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_STRGG (3-isopropylmalate dehydratase large subunit OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=leuC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.290e-20
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG +    VL T  + L  P T+   ++GE+PD + AKDLIL II  I   G     +E+ G+ +E+LSME RMT+CNM +EAG +
Sbjct:  128 DSHTSTHGAFGALAFGIGTSQVEHVLATQTLPLARPKTMAITVEGELPDEVTAKDLILAIIARIGTGGGQGYILEYRGSAIEKLSMEARMTICNMSIEAGAR 229          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOP5 (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain BisA53) GN=leuC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.290e-20
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +R  +DG++P  + AKD+IL IIGEI  AG T   +E+ G+ +  LSME RMT+CNM +E G +
Sbjct:  132 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGDLPAGVTAKDIILAIIGEIGTAGGTGYVLEYAGSAIRALSMEGRMTVCNMSIEGGAR 233          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_LEPIN (3-isopropylmalate dehydratase large subunit OS=Leptospira interrogans GN=leuC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.290e-20
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K   T+   +DG++ D + AKD+IL IIG+I  AGAT   +E+ G+ ++ LSME RMT+CNM +EAG +
Sbjct:  127 DSHTSTHGAFGALAFGIGTSEVEHVLATQTLVQKRAKTMEIRVDGKLSDKVTAKDIILAIIGKIGTAGATGYVIEYRGSAIQALSMEARMTICNMSIEAGAR 228          
The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_RHOPA6.027e-2148.043-isopropylmalate dehydratase large subunit OS=Rho... [more]
LEUC_MAGSM6.027e-2149.023-isopropylmalate dehydratase large subunit OS=Mag... [more]
LEUC_JANMA7.872e-2147.063-isopropylmalate dehydratase large subunit OS=Jan... [more]
LEUC_STRAW1.028e-2049.023-isopropylmalate dehydratase large subunit OS=Str... [more]
LEUC_MARMM1.343e-2049.023-isopropylmalate dehydratase large subunit OS=Mar... [more]
LEUC_RHOBA1.754e-2049.023-isopropylmalate dehydratase large subunit OS=Rho... [more]
LEUC2_BRAJA1.754e-2047.063-isopropylmalate dehydratase large subunit 2 OS=B... [more]
LEUC_STRGG2.290e-2048.043-isopropylmalate dehydratase large subunit OS=Str... [more]
LEUC_RHOP52.290e-2047.063-isopropylmalate dehydratase large subunit OS=Rho... [more]
LEUC_LEPIN2.290e-2048.043-isopropylmalate dehydratase large subunit OS=Lep... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-296 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bp
GTTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTG
CCACTGGCATTGGCAACACTGATGCAGGTTTTGTATTGGGCACAGGGAAA
GTCTTGCTCAAGGTGCCCCCAACTCTGAGATTTGTATTGGATGGTGAAAT
GCCTGATTATTTGCTTGCGAAGGATTTGATTTTACAAATAATTGGTGAAA
TCTCTGTGGCTGGTGCAACATATAAATCTATGGAGTTTGTTGGCACAACT
GTTGAACGTTTAAGTATGGAAGAGCGCATGACATTATGCAACATGGTTGT
CGAAGCTGGGGGAAAGAA
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