CF509788
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOPA (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris GN=leuC PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.027e-21 Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG ++ VL T ++ K +R +DG++PD + AKD+IL IIGEI AG T +E+ G + LSME RMT+CNM +E G + Sbjct: 131 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGQLPDGVTAKDVILAIIGEIGTAGGTGYVLEYAGDAIRSLSMEGRMTVCNMSIEGGAR 232
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_MAGSM (3-isopropylmalate dehydratase large subunit OS=Magnetococcus sp. (strain MC-1) GN=leuC PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 6.027e-21 Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG ++ VL T ++ K P T+ ++GE+P AKD+IL IIG I AG T +EF G+ ++ LSME RMT+CNM +EAG + Sbjct: 129 DSHTATHGAFGALAFGIGTSEVEHVLATQTLMQKKPKTMLIQVEGELPAGSTAKDIILYIIGNIGTAGGTGYVLEFGGSAIQALSMEGRMTVCNMAIEAGAR 230
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_JANMA (3-isopropylmalate dehydratase large subunit OS=Janthinobacterium sp. (strain Marseille) GN=leuC PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 7.872e-21 Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG ++ VL T +L + + +DG +PD + AKD++L +IG+I AG T ++EF G+T+ LSME RMT+CNM +EAG + Sbjct: 128 DSHTSTHGAFGCLAHGIGTSEVEHVLATQTLLAQKSKAMLVQVDGALPDGVTAKDIVLAVIGKIGTAGGTGYAIEFAGSTIRSLSMEGRMTICNMAIEAGAR 229
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_STRAW (3-isopropylmalate dehydratase large subunit OS=Streptomyces avermitilis GN=leuC PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.028e-20 Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG + VL T + L P T+ +DGE+PD + AKDLIL II I G +E+ G+ +E+LSME RMT+CNM +EAG + Sbjct: 128 DSHTSTHGAFGALAFGIGTSQVEHVLATQTLPLARPKTMAITVDGELPDGVTAKDLILAIIARIGTGGGQGYILEYRGSAIEKLSMEARMTICNMSIEAGAR 229
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_MARMM (3-isopropylmalate dehydratase large subunit OS=Maricaulis maris (strain MCS10) GN=leuC PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.343e-20 Identity = 50/102 (49.02%), Postives = 66/102 (64.71%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG T+ G VL + +L + P ++R +DGE + AKD+IL II EI V G T +E+ G+ +E L ME RMT+CNM +EAG + Sbjct: 145 DSHTATHGAFGALAFGIGTTEVGHVLASQCLLQRKPKSMRVTVDGETAAGISAKDIILAIIAEIGVDGGTGCVIEYAGSAIEALDMEGRMTVCNMSIEAGAR 246
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOBA (3-isopropylmalate dehydratase large subunit OS=Rhodopirellula baltica GN=leuC PE=3 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 1.754e-20 Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG ++ VL T +L P T +DGE+ + AKD+IL +IG+I AG T +EF G V L+MEERMT+CNM +EAG + Sbjct: 147 DSHTATHGAFGSLAFGIGTSEVEHVLATQTLLQFKPKTFELRVDGELARGVTAKDMILYLIGQIGTAGGTGYVLEFTGDAVRNLTMEERMTVCNMSIEAGAR 248
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC2_BRAJA (3-isopropylmalate dehydratase large subunit 2 OS=Bradyrhizobium japonicum GN=leuC2 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.754e-20 Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG ++ VL T ++ K +R +DG++PD + KD+IL IIGEI AG T +E+ G + LSME RMT+CNM +E G + Sbjct: 130 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGKLPDGVTGKDIILAIIGEIGTAGGTGYVLEYAGEAIRALSMEGRMTVCNMSIEGGAR 231
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_STRGG (3-isopropylmalate dehydratase large subunit OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=leuC PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.290e-20 Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG + VL T + L P T+ ++GE+PD + AKDLIL II I G +E+ G+ +E+LSME RMT+CNM +EAG + Sbjct: 128 DSHTSTHGAFGALAFGIGTSQVEHVLATQTLPLARPKTMAITVEGELPDEVTAKDLILAIIARIGTGGGQGYILEYRGSAIEKLSMEARMTICNMSIEAGAR 229
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHOP5 (3-isopropylmalate dehydratase large subunit OS=Rhodopseudomonas palustris (strain BisA53) GN=leuC PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.290e-20 Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG ++ VL T ++ K +R +DG++P + AKD+IL IIGEI AG T +E+ G+ + LSME RMT+CNM +E G + Sbjct: 132 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMRVTVDGDLPAGVTAKDIILAIIGEIGTAGGTGYVLEYAGSAIRALSMEGRMTVCNMSIEGGAR 233
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_LEPIN (3-isopropylmalate dehydratase large subunit OS=Leptospira interrogans GN=leuC PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.290e-20 Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 2 Query: 11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316 DSHT T GAFG A GIG ++ VL T ++ K T+ +DG++ D + AKD+IL IIG+I AGAT +E+ G+ ++ LSME RMT+CNM +EAG + Sbjct: 127 DSHTSTHGAFGALAFGIGTSEVEHVLATQTLVQKRAKTMEIRVDGKLSDKVTAKDIILAIIGKIGTAGATGYVIEYRGSAIQALSMEARMTICNMSIEAGAR 228 The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bpback to top |