CF509788

Overview
NameCF509788
Unique NameCF509788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length318
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_LEPIC (3-isopropylmalate dehydratase large subunit OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=leuC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.290e-20
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K   T+   +DG++ D + AKD+IL IIG+I  AGAT   +E+ G+ ++ LSME RMT+CNM +EAG +
Sbjct:  127 DSHTSTHGAFGALAFGIGTSEVEHVLATQTLVQKRAKTMEIRVDGKLSDKVTAKDIILAIIGKIGTAGATGYVIEYRGSAIQALSMEARMTICNMSIEAGAR 228          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_CANMA (3-isopropylmalate dehydratase OS=Candida maltosa GN=LEU1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.290e-20
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T   +   P  +R  +DGE+ + + +KDL+L +IG I  AG T   +EF G  +E LSME RM++CNM +EAG +
Sbjct:  135 DSHTSTHGAFGALAFGIGTSEVEHVLATQTTIQANPKNMRITIDGELSEGITSKDLVLHVIGVIGTAGGTGCVIEFAGKAIEDLSMEARMSICNMAIEAGAR 236          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ANAD2 (3-isopropylmalate dehydratase large subunit OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=leuC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.290e-20
Identity = 52/102 (50.98%), Postives = 66/102 (64.71%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++ G VL +  +L + P TL   +DGE+   L AKDLIL II ++ V G T   +E++G  V  LSME RMTLCNM +EAG +
Sbjct:  141 DSHTATHGAFGALAFGIGTSEVGHVLASQCLLQRRPRTLAVRVDGELGPGLSAKDLILAIIAKLGVGGGTGHVIEYLGPAVRALSMEGRMTLCNMSIEAGAR 242          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_RHIL3 (3-isopropylmalate dehydratase large subunit OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=leuC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.991e-20
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +   +DG++P ++ AKD+IL IIGEI  AG T   +EF G  +  LSME RMT+CNM +E G +
Sbjct:  131 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMLVRVDGQLPPHVTAKDIILAIIGEIGTAGGTGHVIEFAGEAIRALSMEGRMTVCNMTIEGGAR 232          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ANADF (3-isopropylmalate dehydratase large subunit OS=Anaeromyxobacter sp. (strain Fw109-5) GN=leuC PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.991e-20
Identity = 51/102 (50.00%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++ G VL T  +L + P +L   +DG +   + AKDLIL II +I V G T   MEF G  V  L+ME RMTLCNM +E G +
Sbjct:  140 DSHTATHGAFGALAFGIGTSEVGHVLATQCLLQRKPRSLAIRVDGALQPGVTAKDLILAIIAQIGVGGGTGHVMEFTGPAVRALTMEGRMTLCNMAIEGGAR 241          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_SCHPO (3-isopropylmalate dehydratase OS=Schizosaccharomyces pombe GN=leu2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.907e-20
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  +L +    +R  ++G++P+ + +KDLIL IIG I  AG T   +EF G  +E LSME RM++CNM +EAG +
Sbjct:  140 DSHTSTHGAFGALAFGIGTSEVEHVLATQTILQRKSKNMRIRVNGKLPEGIASKDLILHIIGVIGTAGGTGSVIEFCGEAIEGLSMEARMSMCNMSIEAGAR 241          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_HERAR (3-isopropylmalate dehydratase large subunit OS=Herminiimonas arsenicoxydans GN=leuC PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.907e-20
Identity = 48/102 (47.06%), Postives = 66/102 (64.71%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  +L +    +   +DG +P  + AKD++L IIG+I  AG T  ++EF G+T+  LSME RMT+CNM +EAG +
Sbjct:  128 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLLAQKSKAMLVQVDGALPVGVTAKDIVLAIIGKIGTAGGTGYAIEFAGSTIRSLSMEGRMTICNMAIEAGAR 229          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_STRCO (3-isopropylmalate dehydratase large subunit OS=Streptomyces coelicolor GN=leuC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.102e-20
Identity = 49/102 (48.04%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG +    VL T  + L  P T+   +DGE+P+ + AKDLIL II  I   G     +E+ G  +E+LSME RMT+CNM +EAG +
Sbjct:  128 DSHTSTHGAFGALAFGIGTSQVEHVLATQTLPLARPKTMAITVDGELPEGVTAKDLILAIIARIGTGGGQGYILEYRGEAIEKLSMEARMTICNMSIEAGAR 229          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_ANASK (3-isopropylmalate dehydratase large subunit OS=Anaeromyxobacter sp. (strain K) GN=leuC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.102e-20
Identity = 51/102 (50.00%), Postives = 66/102 (64.71%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++ G VL +  +L + P TL   +DG++   L AKDLIL II ++ V G T   +E++G  V  LSME RMTLCNM +EAG +
Sbjct:  141 DSHTATHGAFGALAFGIGTSEVGHVLASQCLLQRRPRTLAVRVDGQLGPGLSAKDLILAIIAKLGVGGGTGHVIEYLGPAVRALSMEGRMTLCNMSIEAGAR 242          
BLAST of CF509788 vs. ExPASy Swiss-Prot
Match: LEUC_AGRVS (3-isopropylmalate dehydratase large subunit OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=leuC PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.102e-20
Identity = 49/102 (48.04%), Postives = 64/102 (62.75%), Query Frame = 2
Query:   11 DSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 316
            DSHT T GAFG  A GIG ++   VL T  ++ K    +   +DG++P  + AKD+IL IIGEI  AG T   +EF G  +E LSME RMT+CNM +E G +
Sbjct:  131 DSHTSTHGAFGALAHGIGTSEVEHVLATQTLIQKKAKNMLVRVDGKLPAGVTAKDIILAIIGEIGTAGGTGHVIEFAGEAIEALSMEGRMTVCNMTIEGGAR 232          
The following BLAST results are available for this feature:
BLAST of CF509788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
LEUC_LEPIC2.290e-2048.043-isopropylmalate dehydratase large subunit OS=Lep... [more]
LEUC_CANMA2.290e-2046.083-isopropylmalate dehydratase OS=Candida maltosa G... [more]
LEUC_ANAD22.290e-2050.983-isopropylmalate dehydratase large subunit OS=Ana... [more]
LEUC_RHIL32.991e-2047.063-isopropylmalate dehydratase large subunit OS=Rhi... [more]
LEUC_ANADF2.991e-2050.003-isopropylmalate dehydratase large subunit OS=Ana... [more]
LEUC_SCHPO3.907e-2047.063-isopropylmalate dehydratase OS=Schizosaccharomyc... [more]
LEUC_HERAR3.907e-2047.063-isopropylmalate dehydratase large subunit OS=Her... [more]
LEUC_STRCO5.102e-2048.043-isopropylmalate dehydratase large subunit OS=Str... [more]
LEUC_ANASK5.102e-2050.003-isopropylmalate dehydratase large subunit OS=Ana... [more]
LEUC_AGRVS5.102e-2048.043-isopropylmalate dehydratase large subunit OS=Agr... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_125000-296 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-81_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF509788 ID=CF509788; Name=CF509788; organism=Citrus sinensis; type=EST; length=318bp
GTTAGGTACAGACTCCCACACATGTACTGCTGGAGCATTTGGCCAATTTG
CCACTGGCATTGGCAACACTGATGCAGGTTTTGTATTGGGCACAGGGAAA
GTCTTGCTCAAGGTGCCCCCAACTCTGAGATTTGTATTGGATGGTGAAAT
GCCTGATTATTTGCTTGCGAAGGATTTGATTTTACAAATAATTGGTGAAA
TCTCTGTGGCTGGTGCAACATATAAATCTATGGAGTTTGTTGGCACAACT
GTTGAACGTTTAAGTATGGAAGAGCGCATGACATTATGCAACATGGTTGT
CGAAGCTGGGGGAAAGAA
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